Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_G10
         (665 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0086 - 20763085-20763162,20763233-20763286,20763287-207639...    32   0.36 
10_01_0206 - 2206359-2209142                                           29   4.4  
03_05_0751 - 27389910-27392105                                         29   4.4  
11_06_0611 + 25461469-25461655,25461670-25462238                       28   5.8  
04_04_1690 - 35382241-35382553,35382614-35382933,35383601-353851...    28   5.8  
04_04_0687 - 27262742-27262784,27263429-27263584,27263698-272637...    28   7.7  
02_02_0700 + 13058446-13058790,13059352-13059582,13060083-130602...    28   7.7  

>09_06_0086 -
           20763085-20763162,20763233-20763286,20763287-20763975,
           20764173-20764324,20764404-20764604,20764920-20765064,
           20765552-20765588,20765880-20765965,20766093-20766329,
           20766501-20766609,20767025-20767135
          Length = 632

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
 Frame = +1

Query: 139 SQWRGGRSTKSSPVYSTPFYFT---VPAVNSHTTTRRVTRYGPSVMSMSIAILS 291
           S W+GGRS+K       P Y     +P +  H T     RY P +     +I+S
Sbjct: 308 SMWKGGRSSKLEGSDHIPVYIVLNEIPELPVHNTPSSAARYLPEIRGRQQSIVS 361


>10_01_0206 - 2206359-2209142
          Length = 927

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +3

Query: 552 IVEMLQDKIVFITEIINRHEYVPKMPSRSGCRFDFRYI 665
           I++ + DK  +I  +  R   + K+P   GC F+ RY+
Sbjct: 574 IIKSISDKSKYIVVLELRGLAIEKVPDAVGCLFNLRYL 611


>03_05_0751 - 27389910-27392105
          Length = 731

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -2

Query: 427 KNSRLIEPRGGADVASTARSSSEKPVISLLTFL 329
           KNS++ +P+G +   S  R  ++K V+ L T L
Sbjct: 328 KNSQVAQPKGPSGTRSRGRKPTKKDVVDLRTLL 360


>11_06_0611 + 25461469-25461655,25461670-25462238
          Length = 251

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 19/52 (36%), Positives = 23/52 (44%)
 Frame = -2

Query: 499 QNTVHTSQGTHSGCWKGQRARRFWKNSRLIEPRGGADVASTARSSSEKPVIS 344
           QN V    G+  GCW G   RR     R+ E  G  D    + SSS+ P  S
Sbjct: 39  QNPVEA--GSSGGCWVGVGRRR----GRIREAGGAVDGGGRSSSSSQPPSTS 84


>04_04_1690 - 35382241-35382553,35382614-35382933,35383601-35385164,
            35385254-35385372,35385701-35385811,35386068-35386595,
            35386702-35386881,35386957-35387556,35387646-35388066,
            35388183-35388280,35388372-35389260,35389366-35389544,
            35389647-35389763,35389862-35389952,35390578-35390753
          Length = 1901

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = +2

Query: 416  PRVLPETSRSLALPATGMRALGS--VDRVLRADRIP*RAR-YAHETREYCR 559
            P V PE SRSL+ PA     +GS  + R     +IP R R + +   + CR
Sbjct: 1450 PHVCPEPSRSLSAPANIAARMGSREIRRQFSGIQIPRRDRQFIYSRFKLCR 1500


>04_04_0687 -
           27262742-27262784,27263429-27263584,27263698-27263783,
           27263881-27264188,27265337-27265455,27265989-27266075,
           27266440-27266546
          Length = 301

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 277 IAILSTSLTCAASRNYWVGTLKGR*PVSR 363
           IA  +T+ TC    ++W GT KG+  V R
Sbjct: 221 IAAAATATTCHGPNSWWKGTEKGKMKVRR 249


>02_02_0700 +
           13058446-13058790,13059352-13059582,13060083-13060241,
           13060483-13060635,13061619-13061702,13061847-13061915,
           13062374-13062421,13062487-13062621
          Length = 407

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 20/72 (27%), Positives = 33/72 (45%)
 Frame = +2

Query: 233 RGELLDTDRQLCRCRLRFYRLHLRVLRVGTIG*ER*KGDNRFLGTTAGGRRYVRPASGFD 412
           + E  +  R+L R +    R+    L +G    E   G+N  +G+T G   YVR  S  +
Sbjct: 12  KDEQKNLKRELLRAQEEVKRIQSVPLVIGQFM-EMVDGNNGIVGSTTGSNYYVRILSTIN 70

Query: 413 KPRVLPETSRSL 448
           +  + P  S +L
Sbjct: 71  RELLKPSASVAL 82


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,330,479
Number of Sequences: 37544
Number of extensions: 404479
Number of successful extensions: 1467
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1466
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)