Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_G09
         (580 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ...    29   0.37 
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    29   0.37 
SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl modifica...    25   8.0  
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi...    25   8.0  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    25   8.0  

>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1098

 Score = 29.5 bits (63), Expect = 0.37
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -1

Query: 565 YNYCSLAHHFLTIRVRRVCISRLET 491
           Y  C+LA  F+T R+R+  + RLET
Sbjct: 897 YQVCALADDFMTSRIRQDLLPRLET 921


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 29.5 bits (63), Expect = 0.37
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 17  IGSTSLDSFTISERLWPSTRSRNGAWSVTH 106
           + S  + S T+S   WP+T   +GAWS T+
Sbjct: 52  VKSGLISSSTVSAWTWPATLLSSGAWSYTY 81


>SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl
           modification enzyme|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 666

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -1

Query: 394 RRLLLEGVCNHHQRATGRTNEILSCKD 314
           +RL++EG   ++ +  G  N+ L+C+D
Sbjct: 555 QRLIIEGKYTYYIKRQGTQNKQLNCRD 581


>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 749

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +1

Query: 355 AGGDYKHLLKEGDEEIKKAVLEFNQYDLYTKSAAIPDIEALWPYY 489
           A GD+K       + ++ A  EFN YD    S+    ++ L P Y
Sbjct: 184 AKGDWKLCGFSFSQSVESARYEFNDYDFGIPSSLQQSMDFLAPEY 228


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1465

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 361 GDYKHLLKEGDEEIKKAVLEFN 426
           G+Y+HL    + E+K+ + EFN
Sbjct: 786 GNYEHLFVSTNSELKQQLSEFN 807


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,485,902
Number of Sequences: 5004
Number of extensions: 53629
Number of successful extensions: 141
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)