Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_G09
(580 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0471 + 21130839-21130869,21131013-21131127,21132228-211323... 204 3e-53
01_03_0094 - 12470441-12471015,12471492-12471738,12472467-12473285 33 0.22
01_03_0091 + 12358475-12359293,12360022-12360268,12360745-12361319 33 0.22
03_06_0460 - 34098115-34098622,34098981-34099355,34100939-341011... 31 0.50
01_01_0972 + 7672048-7672390,7672546-7672709,7672864-7672961,767... 31 0.66
02_05_1231 - 35104832-35105002,35105104-35105167,35105267-351055... 31 0.88
11_01_0788 + 6599962-6602700 29 2.0
05_03_0169 - 9123684-9124823,9125408-9125594,9126379-9126476,912... 29 3.5
11_06_0437 - 23533218-23536382 28 4.7
02_05_1064 - 33842970-33843344,33843596-33843641,33844124-338441... 28 4.7
12_01_0335 - 2583476-2583493,2583919-2583965,2584151-2584274,258... 27 8.2
08_02_1082 + 24225592-24226422 27 8.2
05_03_0168 - 9116648-9117775,9118699-9118885,9119724-9119821,911... 27 8.2
>06_03_0471 +
21130839-21130869,21131013-21131127,21132228-21132309,
21132444-21132648,21133237-21133296,21133420-21133472,
21133589-21133711,21133844-21133913,21134012-21134090,
21134172-21134253,21134272-21134310
Length = 312
Score = 204 bits (499), Expect = 3e-53
Identities = 94/174 (54%), Positives = 121/174 (69%), Gaps = 3/174 (1%)
Frame = +1
Query: 1 DHPDDDWFHLIGLIHDLGKVM---AFYEEPQWCVVGDTFAVGCKWGKSIVYGDDSFKDNP 171
D PD+DW HL GLIHDLGKV+ +F E PQW VVGDTF VGC + + V+ FK+NP
Sbjct: 130 DFPDEDWLHLTGLIHDLGKVLLHPSFGELPQWSVVGDTFPVGCAFDECNVHFK-YFKENP 188
Query: 172 DTYNPKYNTEYGMYEPNCGLENLMVSWGHDEYLYRVLVHNKSKFPKKGLYMIRFHSFYPW 351
D NPK NT++G Y CGL+N+++SWGHD+Y+Y V NK+ P GL++IR+HSFYP
Sbjct: 189 DYLNPKLNTKFGAYSEGCGLDNVLMSWGHDDYMYLVAKENKTTLPSAGLFIIRYHSFYPL 248
Query: 352 HAGGDYKHLLKEGDEEIKKAVLEFNQYDLYTKSAAIPDIEALWPYYESLIEKYI 513
H G Y HL+ + D+E K + FN+YDLY+KS D+E + PYY SLIEK I
Sbjct: 249 HKHGAYMHLMNDEDKENLKWLRVFNKYDLYSKSNERIDVEKVKPYYMSLIEKRI 302
>01_03_0094 - 12470441-12471015,12471492-12471738,12472467-12473285
Length = 546
Score = 32.7 bits (71), Expect = 0.22
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -1
Query: 370 CNHHQRATGRTNE-ILSCKDLFWGTLICCAP 281
C HHQRA G + +L C DL +G L C P
Sbjct: 197 CPHHQRAMGGCHGGVLCCADLPYGFLTSCVP 227
>01_03_0091 + 12358475-12359293,12360022-12360268,12360745-12361319
Length = 546
Score = 32.7 bits (71), Expect = 0.22
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -1
Query: 370 CNHHQRATGRTNE-ILSCKDLFWGTLICCAP 281
C HHQRA G + +L C DL +G L C P
Sbjct: 197 CPHHQRAMGGCHGGVLCCADLPYGFLTSCVP 227
>03_06_0460 -
34098115-34098622,34098981-34099355,34100939-34101156,
34101235-34101297
Length = 387
Score = 31.5 bits (68), Expect = 0.50
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = +1
Query: 259 DEYLYRVLVHNKSKFPKKGLYMIRFHSFYPWHAGGDYKHLLKEGDEEIKKAVLEFNQYDL 438
D+ L R NK KG ++ F+S Y W GD +L+ DE++ K ++E +
Sbjct: 180 DDRLIRGAPMNKHSSFWKGADVLVFNS-YLWWMTGDKIQILRGADEDMSKDIVEMEAAEA 238
Query: 439 Y 441
Y
Sbjct: 239 Y 239
>01_01_0972 +
7672048-7672390,7672546-7672709,7672864-7672961,
7673040-7673361,7674021-7675220
Length = 708
Score = 31.1 bits (67), Expect = 0.66
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 23 STSLDSFTISERLWPSTRSRNGAWSVTHSPSDVNGVN 133
S L S + S +WP+ +++ G W SP+ G+N
Sbjct: 270 SMLLGSISSSGFIWPALQAKQGEWYTDPSPTSFKGIN 306
>02_05_1231 -
35104832-35105002,35105104-35105167,35105267-35105557,
35105755-35105999,35106410-35106489,35106890-35107006,
35107150-35108002,35108081-35108161
Length = 633
Score = 30.7 bits (66), Expect = 0.88
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Frame = -1
Query: 550 LAHHFLTIRVRRVCISRLETRSKAR---ELLCPGSRRSLCTSRIG*TREQL 407
+ H+ R+RR+ SRL ++ R E+ C G++ SLC ++ TR ++
Sbjct: 279 IPHYIGDRRIRRLFASRLRKAARNRICGEMSCKGNKLSLCEKKMPTTRRRV 329
>11_01_0788 + 6599962-6602700
Length = 912
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Frame = -3
Query: 299 FDLLCTKTLYR--YSSCPQDTIKFS 231
FDL C KT Y +S CPQD K +
Sbjct: 340 FDLFCKKTFYNSMHSKCPQDLEKLA 364
>05_03_0169 -
9123684-9124823,9125408-9125594,9126379-9126476,
9127124-9127182,9128748-9129081
Length = 605
Score = 28.7 bits (61), Expect = 3.5
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +2
Query: 59 LWPSTRSRNGAWSVTHSPSDVNGVN 133
L+P +++G W T SPS+++G+N
Sbjct: 199 LYPYLETKHGEWYQTDSPSNLDGLN 223
>11_06_0437 - 23533218-23536382
Length = 1054
Score = 28.3 bits (60), Expect = 4.7
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +1
Query: 7 PDDDWF-HLIGLIHDLGKVMAFYEEPQWCVVGD 102
PD F H+ IHDL + +AF+ Q C VGD
Sbjct: 505 PDGSHFDHIRCKIHDLLRQLAFHLSRQECFVGD 537
>02_05_1064 -
33842970-33843344,33843596-33843641,33844124-33844176,
33844255-33844512,33845245-33845430,33845862-33845903,
33846598-33846741
Length = 367
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +1
Query: 328 RFHSFYPWHAGGDYKHLLKEGDEEIKKAVLEFN 426
RFH F+ H G + ++ +EE+KK ++ N
Sbjct: 191 RFHIFWVRHMMGQKESMMDHDNEELKKGCVDHN 223
>12_01_0335 -
2583476-2583493,2583919-2583965,2584151-2584274,
2584421-2584665,2585281-2585404,2585424-2585456
Length = 196
Score = 27.5 bits (58), Expect = 8.2
Identities = 17/57 (29%), Positives = 23/57 (40%)
Frame = -1
Query: 331 ILSCKDLFWGTLICCAPKPCIGTRRVPKIPSNSRVHSWARTFRIQYCI*GYRCQDCL 161
+L C D F LIC C R +PK H + R + +C+DCL
Sbjct: 105 MLFCPDDFLSCLICMEASQCDDPRYIPK-------HKFGRHMSRHHSKATVKCKDCL 154
>08_02_1082 + 24225592-24226422
Length = 276
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 415 LEFNQYDLYTKSAAIPDIEALWP 483
L+F+ Y TKS A PD+ WP
Sbjct: 225 LDFSDYPSITKSLADPDLHFEWP 247
>05_03_0168 -
9116648-9117775,9118699-9118885,9119724-9119821,
9119948-9120114,9122242-9122578
Length = 638
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 59 LWPSTRSRNGAWSVTHSPSDVNGVN 133
L+P ++ G W T SP+ +NG N
Sbjct: 236 LYPFLETKRGQWYQTDSPTSLNGQN 260
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,077,475
Number of Sequences: 37544
Number of extensions: 341072
Number of successful extensions: 842
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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