Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_G09
(580 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF038609-3|AAU87825.1| 193|Caenorhabditis elegans Hypothetical ... 134 6e-32
AL117204-44|CAN86917.1| 148|Caenorhabditis elegans Hypothetical... 29 3.2
AL117204-43|CAB55131.2| 917|Caenorhabditis elegans Hypothetical... 29 3.2
AL032654-5|CAD91715.2| 516|Caenorhabditis elegans Hypothetical ... 29 3.2
AL032654-4|CAA21721.2| 552|Caenorhabditis elegans Hypothetical ... 29 3.2
AF043697-4|AAO38636.1| 431|Caenorhabditis elegans Hypothetical ... 29 3.2
AF043697-3|AAB97558.1| 548|Caenorhabditis elegans Hypothetical ... 29 3.2
AF000197-8|AAB52897.2| 328|Caenorhabditis elegans Star (rna bin... 27 9.6
AF000197-7|AAU20839.1| 445|Caenorhabditis elegans Star (rna bin... 27 9.6
AF000197-6|AAP68907.1| 403|Caenorhabditis elegans Star (rna bin... 27 9.6
>AF038609-3|AAU87825.1| 193|Caenorhabditis elegans Hypothetical
protein C54E4.5 protein.
Length = 193
Score = 134 bits (323), Expect = 6e-32
Identities = 53/93 (56%), Positives = 67/93 (72%)
Frame = +1
Query: 1 DHPDDDWFHLIGLIHDLGKVMAFYEEPQWCVVGDTFAVGCKWGKSIVYGDDSFKDNPDTY 180
+HPD W HL GLIHDLGK+M+ + E QW V GDT+ VGC SIVYG SF NPD
Sbjct: 100 NHPDKPWMHLAGLIHDLGKIMSVWGEEQWAVTGDTYPVGCAPAASIVYGKSSFDGNPDIS 159
Query: 181 NPKYNTEYGMYEPNCGLENLMVSWGHDEYLYRV 279
+P Y T+ GMY+ CG+ENL+++W HDEY+Y+V
Sbjct: 160 HPVYGTQMGMYQEKCGMENLLMTWSHDEYMYKV 192
>AL117204-44|CAN86917.1| 148|Caenorhabditis elegans Hypothetical
protein Y116A8C.26b protein.
Length = 148
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 209 CTSPTVDSRI*WYLGDTTSTYTGFWCTT 292
C SP +D + LG+ T Y GFW T
Sbjct: 92 CNSPQLDLVLEQILGNITRDYVGFWYKT 119
>AL117204-43|CAB55131.2| 917|Caenorhabditis elegans Hypothetical
protein Y116A8C.26a protein.
Length = 917
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 209 CTSPTVDSRI*WYLGDTTSTYTGFWCTT 292
C SP +D + LG+ T Y GFW T
Sbjct: 92 CNSPQLDLVLEQILGNITRDYVGFWYKT 119
>AL032654-5|CAD91715.2| 516|Caenorhabditis elegans Hypothetical
protein Y52B11A.3b protein.
Length = 516
Score = 28.7 bits (61), Expect = 3.2
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +1
Query: 10 DDDWFHLIGLIHDLGKVMAFY 72
DD W HL G+++D+ K + F+
Sbjct: 33 DDCWVHLFGIVYDVTKYLDFH 53
>AL032654-4|CAA21721.2| 552|Caenorhabditis elegans Hypothetical
protein Y52B11A.3a protein.
Length = 552
Score = 28.7 bits (61), Expect = 3.2
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +1
Query: 10 DDDWFHLIGLIHDLGKVMAFY 72
DD W HL G+++D+ K + F+
Sbjct: 69 DDCWVHLFGIVYDVTKYLDFH 89
>AF043697-4|AAO38636.1| 431|Caenorhabditis elegans Hypothetical
protein F56C11.6b protein.
Length = 431
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +1
Query: 190 YNTEYGMYEPNCGLENLMVSWGHDEYLYRVLVHNKSKF 303
Y+ YG Y L N+M HD Y Y+ HN + F
Sbjct: 286 YSINYGTYR----LANIMTDLQHDVYFYQFDYHNSAGF 319
>AF043697-3|AAB97558.1| 548|Caenorhabditis elegans Hypothetical
protein F56C11.6a protein.
Length = 548
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +1
Query: 190 YNTEYGMYEPNCGLENLMVSWGHDEYLYRVLVHNKSKF 303
Y+ YG Y L N+M HD Y Y+ HN + F
Sbjct: 403 YSINYGTYR----LANIMTDLQHDVYFYQFDYHNSAGF 436
>AF000197-8|AAB52897.2| 328|Caenorhabditis elegans Star (rna
binding protein) familyprotein 2, isoform a protein.
Length = 328
Score = 27.1 bits (57), Expect = 9.6
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 367 YKHLLKEGDEEIKKAVLEFNQYDLYTKSAAIPDIE 471
+ HL + DEEI K + Q + +SA +PD E
Sbjct: 48 FHHLERLADEEINKVRVVLFQCEFSKESAPLPDAE 82
>AF000197-7|AAU20839.1| 445|Caenorhabditis elegans Star (rna
binding protein) familyprotein 2, isoform c protein.
Length = 445
Score = 27.1 bits (57), Expect = 9.6
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 367 YKHLLKEGDEEIKKAVLEFNQYDLYTKSAAIPDIE 471
+ HL + DEEI K + Q + +SA +PD E
Sbjct: 90 FHHLERLADEEINKVRVVLFQCEFSKESAPLPDAE 124
>AF000197-6|AAP68907.1| 403|Caenorhabditis elegans Star (rna
binding protein) familyprotein 2, isoform b protein.
Length = 403
Score = 27.1 bits (57), Expect = 9.6
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 367 YKHLLKEGDEEIKKAVLEFNQYDLYTKSAAIPDIE 471
+ HL + DEEI K + Q + +SA +PD E
Sbjct: 48 FHHLERLADEEINKVRVVLFQCEFSKESAPLPDAE 82
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,727,797
Number of Sequences: 27780
Number of extensions: 296742
Number of successful extensions: 856
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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