Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_G07
         (467 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c...    26   3.3  
SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr...    25   5.8  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   5.8  
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa...    25   5.8  
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    25   5.8  
SPBPB2B2.08 |||conserved fungal protein|Schizosaccharomyces pomb...    25   5.8  
SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni...    25   7.6  
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc...    25   7.6  
SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces po...    25   7.6  

>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 767

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 231 VVHVHLPSEFCRRLSGLPF*LHR 299
           +VH+HL     R   G PF LHR
Sbjct: 558 IVHLHLAYHIVRIAMGRPFLLHR 580


>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 172

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +2

Query: 266 APVRSALLAASLQPCPMAP 322
           AP RSA  AA+L P  MAP
Sbjct: 15  APARSASTAAALPPRTMAP 33


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +1

Query: 208 ASPSQWSTSSTCTYPRSFAGACPVCPSSCIAPAVPYGSCNACTSLPRSP 354
           ++P     S+  + P     A P+ PS+ IAP +P G   A    P +P
Sbjct: 426 SAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAP 474


>SPAC2G11.13 |atg22||autophagy associated protein Atg22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 119 RHIAFSCCTTGSHSGLSFANWSKES 45
           R+I FSC   GS SG+   +WS  S
Sbjct: 115 RYILFSCVIIGSISGI-ILSWSPSS 138


>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 14  SVVMSTKRKCPIPSTNSRRTTPNGYQWCNN*RRCASHRI 130
           S + +  RK  I S+N      +GY + N+ R    HRI
Sbjct: 164 SAITAPSRKVSITSSNGVSARLSGYAFANSKRNRDFHRI 202


>SPBPB2B2.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 220

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +2

Query: 332 AHHYHDHLKLFNNFIISF 385
           +H YH H+  F+ +I++F
Sbjct: 96  SHKYHKHIPAFSAYIVAF 113


>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
           Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 737

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 145 VHLDCPAYDVMHCALTSFIRYASPSQWSTSST 240
           VH D PA D++   +T   RYA   +W   +T
Sbjct: 451 VH-DSPALDLLQSLITKAWRYAELGRWLDVAT 481


>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 688

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 186 THKFHQVREPVAMVDVVHVHLPSEFCRRL 272
           +HK H+V  P++ +D   +H    F  RL
Sbjct: 163 SHKSHRVAVPMSFMDSSALHTSPAFSERL 191


>SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 348

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 17/37 (45%), Positives = 19/37 (51%)
 Frame = +3

Query: 69  GQPRMATSGATTEGDVPRTGSASSGRAFRLSCL*RHA 179
           G PR AT+    EG  PR  SASS      +CL  HA
Sbjct: 239 GTPRGATN--CNEGGCPRCNSASSCGKELDTCLCLHA 273


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,765,635
Number of Sequences: 5004
Number of extensions: 31819
Number of successful extensions: 106
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)