Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_G07
(467 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0015 - 31036091-31036202,31037839-31037916,31038408-310386... 30 0.81
06_02_0035 + 10816723-10819497,10819964-10820011 29 2.5
08_01_0132 + 1055977-1056483,1058083-1058186,1058330-1058385,105... 28 3.3
09_03_0062 - 11969719-11970036,11970115-11970843 28 4.3
06_01_0835 - 6315762-6316844 28 4.3
07_01_0495 + 3722319-3722517,3723325-3723482,3723652-3723929,372... 27 5.7
06_01_0569 + 4019254-4021996,4022121-4022272,4022356-4022427,402... 27 7.5
03_05_0920 - 28812796-28813325,28814019-28816377 27 7.5
08_02_1426 + 27009720-27010787,27011846-27012517,27012999-270137... 27 10.0
08_01_0118 + 947394-947885,948709-948810,948914-949219,949557-94... 27 10.0
04_03_0309 - 14186880-14187151,14187428-14188652 27 10.0
>03_06_0015 -
31036091-31036202,31037839-31037916,31038408-31038655,
31038744-31038792,31038919-31039890,31040059-31040894
Length = 764
Score = 30.3 bits (65), Expect = 0.81
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 205 YASPSQWSTSSTCTYPRSFAGACPV 279
Y S SQW+T+S+ P F G+ PV
Sbjct: 337 YTSASQWATTSSSVLPLPFCGSNPV 361
>06_02_0035 + 10816723-10819497,10819964-10820011
Length = 940
Score = 28.7 bits (61), Expect = 2.5
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +1
Query: 184 ALTSFIRYASPSQWSTSSTCTYPRSFAGACPVCPSSCIAP 303
A+ F+ + Q T C + + A CP C S C +P
Sbjct: 352 AVIKFLSKKTKPQAQTHGCCGWMTATARPCPACRSDCASP 391
>08_01_0132 +
1055977-1056483,1058083-1058186,1058330-1058385,
1058534-1058688,1058842-1058955,1059207-1059449
Length = 392
Score = 28.3 bits (60), Expect = 3.3
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +1
Query: 205 YASPSQWSTSSTCTYPRSFAGACPVCPSSCIAPAVPYGSCNACT 336
Y PS +SS T P + +CP+CP +A AV CT
Sbjct: 114 YYPPSPTRSSSPPT-PAAHTTSCPICPYVLLAAAVGITIIFLCT 156
>09_03_0062 - 11969719-11970036,11970115-11970843
Length = 348
Score = 27.9 bits (59), Expect = 4.3
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = +3
Query: 63 REGQPRMATSGATTEGDVPRTGSASSGRAFRLSCL 167
++G+P T+ ++ PRTG+ S FR++ +
Sbjct: 3 QQGEPMSTTTSGSSRARTPRTGNKISKERFRITAV 37
>06_01_0835 - 6315762-6316844
Length = 360
Score = 27.9 bits (59), Expect = 4.3
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = +1
Query: 184 ALTSFIRYASPSQWSTSSTCTYPRSFAGACPVCPSSCIAP 303
AL FIR ASP+ STS+ Y S P S +P
Sbjct: 27 ALEPFIRSASPTSTSTSTPLFYSSSSISTTTTTPFSYSSP 66
>07_01_0495 +
3722319-3722517,3723325-3723482,3723652-3723929,
3723946-3724474
Length = 387
Score = 27.5 bits (58), Expect = 5.7
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +2
Query: 14 SVVMSTKRKCPIPSTNSRRTTPN 82
S+V + K KCP STNS + TP+
Sbjct: 221 SLVAALKLKCPCWSTNSSQITPS 243
>06_01_0569 +
4019254-4021996,4022121-4022272,4022356-4022427,
4022521-4022673,4022749-4022912,4022990-4023137,
4023530-4023652,4023774-4023861,4023951-4024129
Length = 1273
Score = 27.1 bits (57), Expect = 7.5
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +1
Query: 229 TSSTCTYPRSFAGACPVCPSSCIAPAVPYGSCNAC-TSLPRS 351
TSS T + +G P+ SS PA+ Y C C +LP +
Sbjct: 445 TSSASTPLVTTSGTIPMVISSATMPALRYDDCTMCQKALPHA 486
>03_05_0920 - 28812796-28813325,28814019-28816377
Length = 962
Score = 27.1 bits (57), Expect = 7.5
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 223 WSTSSTCTYPRSFAGACPVCPSSCIAPAVPYGS 321
WST C+ PR++AG C S+ AV G+
Sbjct: 59 WSTGDPCSSPRAWAGV--TCDSAGRVTAVQVGN 89
>08_02_1426 +
27009720-27010787,27011846-27012517,27012999-27013793,
27014914-27014943,27018095-27019987
Length = 1485
Score = 26.6 bits (56), Expect = 10.0
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = +1
Query: 163 AYDVMHCALTSFIRYASPSQWSTSSTCT 246
AYDV C +R PS W +CT
Sbjct: 76 AYDVEDCLQDYVVRLEKPSWWRRRLSCT 103
>08_01_0118 +
947394-947885,948709-948810,948914-949219,949557-949616
Length = 319
Score = 26.6 bits (56), Expect = 10.0
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +2
Query: 260 LPAPVRSALLAASLQPCPMAPVMLAHHYHDH 352
LP P+ L++S P P P+ L H H H
Sbjct: 14 LPNPLHPRHLSSSSSPSPPPPLHLHLHLHRH 44
>04_03_0309 - 14186880-14187151,14187428-14188652
Length = 498
Score = 26.6 bits (56), Expect = 10.0
Identities = 21/62 (33%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Frame = +1
Query: 109 AMCLAQDLRAQGVHLDCP-AYDVMHCALTSFIRYASPSQWSTSSTCTYPRSFAGACPVCP 285
A A L GV L C A + C L RY S + S +S FA +C P
Sbjct: 39 ASAAASALALLGVPLPCTCARPHLPCLLAFLSRYPSRALASLASALLSRFPFASSCSPSP 98
Query: 286 SS 291
SS
Sbjct: 99 SS 100
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,091,706
Number of Sequences: 37544
Number of extensions: 240734
Number of successful extensions: 869
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 869
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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