Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_G07
         (467 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical pr...    28   3.8  
U80846-5|AAP82647.1|  825|Caenorhabditis elegans Hypothetical pr...    27   5.1  
AL110500-5|CAB60428.1| 1050|Caenorhabditis elegans Hypothetical ...    27   6.7  
AF039037-7|AAC48231.3|  441|Caenorhabditis elegans Nuclear hormo...    27   6.7  
AC024136-6|AAF35965.3|  425|Caenorhabditis elegans Hypothetical ...    27   6.7  
Z93379-5|CAB07593.3|  351|Caenorhabditis elegans Hypothetical pr...    27   8.9  
AC084154-2|ABO16460.1|  272|Caenorhabditis elegans Hypothetical ...    27   8.9  

>Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical protein
            F46C3.3 protein.
          Length = 2557

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +3

Query: 36   ENVRFLRPIREGQPRMATSGATTEGDVPRTGS 131
            +NVR +RPI   QP +  S   +E  V RT S
Sbjct: 1688 DNVRLIRPITPAQPPITQSPVPSEPVVVRTPS 1719


>U80846-5|AAP82647.1|  825|Caenorhabditis elegans Hypothetical
           protein K06A9.1c protein.
          Length = 825

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +1

Query: 208 ASPSQWSTSSTCTYPRSFAGACPVCPSSCIAPAVPYGSCNACTS 339
           +SP+  S S+  T P S   +    PSS    A+P  S +A +S
Sbjct: 12  SSPAATSPSTAVTSPSSLGTSSSPLPSSISTSALPIASSSASSS 55


>AL110500-5|CAB60428.1| 1050|Caenorhabditis elegans Hypothetical
           protein Y87G2A.5 protein.
          Length = 1050

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 14/51 (27%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
 Frame = +1

Query: 10  LVGGNVDKTKMSDSFDQFAKDNPEWLPV--VQQLKAMCLAQDLRAQGVHLD 156
           L+GGN+D+ +++ + +  A+D P+ +P   V  L+   L+   + + ++LD
Sbjct: 669 LLGGNLDEKEIAVAKEGQARDYPDGIPECGVDALRFALLSYTSQGRDINLD 719


>AF039037-7|AAC48231.3|  441|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 204 protein.
          Length = 441

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 17/55 (30%), Positives = 19/55 (34%)
 Frame = +1

Query: 184 ALTSFIRYASPSQWSTSSTCTYPRSFAGACPVCPSSCIAPAVPYGSCNACTSLPR 348
           AL SFI    P   S   +    +    AC VC            SCN C S  R
Sbjct: 22  ALESFIEQKPPKTKSLRKSGKPYQFVPSACQVCYGKATGHHYDVASCNGCKSFFR 76


>AC024136-6|AAF35965.3|  425|Caenorhabditis elegans Hypothetical
           protein F54A3.1 protein.
          Length = 425

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +1

Query: 184 ALTSFIRYASPSQWSTSSTCTYPRSFAGACPVCPSSCIAP 303
           A    +R A   +   SST   P++ A   P  PSS +AP
Sbjct: 203 ASPEMLRLAKHYKIGASSTSAPPKTTAAGAPKRPSSAVAP 242


>Z93379-5|CAB07593.3|  351|Caenorhabditis elegans Hypothetical
           protein F21H7.7 protein.
          Length = 351

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
 Frame = +2

Query: 305 PCPM-----APVMLAHHYHDHLKLFNNFIISFTRAYIFLLNVF 418
           PCP      +PV++A    D + + N FII F  A+I   N F
Sbjct: 188 PCPTVEFFNSPVVIAISDEDVVNIKNRFIIPFIGAHIVFNNSF 230


>AC084154-2|ABO16460.1|  272|Caenorhabditis elegans Hypothetical
           protein Y22D7AR.5 protein.
          Length = 272

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 208 ASPSQWSTSSTCTYPRSFAGACPVC 282
           A+P++  TSSTC + ++ A   P C
Sbjct: 233 ATPAEPMTSSTCNFLKTLASMSPKC 257


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,169,863
Number of Sequences: 27780
Number of extensions: 201253
Number of successful extensions: 690
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 839684522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)