Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_G06
         (664 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0645 + 4890647-4890682,4891684-4891929,4892021-4892317,489...    31   0.82 
05_03_0619 + 16274255-16274396,16274775-16274848,16275111-162761...    29   3.3  
05_01_0355 - 2774217-2774318,2774608-2774775,2774872-2775090,277...    29   4.4  
03_06_0109 - 31717691-31718311,31719110-31719223,31719316-317196...    28   7.6  

>01_01_0645 +
           4890647-4890682,4891684-4891929,4892021-4892317,
           4892407-4892574,4892674-4892841,4892924-4893004,
           4893105-4893171,4893657-4893751,4894027-4894099,
           4894177-4894247,4894325-4894374,4895263-4895375,
           4895461-4895513
          Length = 505

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 13/43 (30%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
 Frame = +2

Query: 173 RKMLSYNQYNMDKYTYVPTALDMYTTCLRDPVF--WKIMKRVM 295
           R+M+SY+   +   TY+P  +++   C+R+P F  W++ +++M
Sbjct: 155 REMMSYSYAALK--TYMPEMVEVLIDCVRNPAFLDWEVKEQIM 195


>05_03_0619 +
           16274255-16274396,16274775-16274848,16275111-16276139,
           16276484-16276702,16277228-16277250,16277482-16277606,
           16279480-16279670,16280202-16280360,16281359-16281598
          Length = 733

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -1

Query: 172 EHCHHMEHFGIVIGH-IHATEDKSGKHFHVFGF 77
           E CH M   GIV+GH +   EDK  + F ++ F
Sbjct: 468 EKCHFMVREGIVLGHRVFEREDKIMEKFIIYFF 500


>05_01_0355 -
           2774217-2774318,2774608-2774775,2774872-2775090,
           2775176-2775319,2775485-2775767,2775874-2775929,
           2776012-2776161,2776254-2776340,2776414-2776449,
           2777100-2777162,2777247-2777327,2777407-2777496,
           2777690-2777767,2777855-2778058,2778139-2778186,
           2778262-2778447,2779879-2779978,2780121-2780260
          Length = 744

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +3

Query: 384 LKRWSPLWMNMTWISRMHFTWTRLRCKRRSLI 479
           +KRWS   + + W+SR  F   R    RRSLI
Sbjct: 98  VKRWSNHKIMVRWLSRFFFYLDRYFISRRSLI 129


>03_06_0109 -
           31717691-31718311,31719110-31719223,31719316-31719606,
           31719698-31720006,31720098-31720865
          Length = 700

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
 Frame = +2

Query: 185 SYNQYNMDKYTYVPTALDMYTTCLRDP-----VFWKIMKRVMNSFVLFKNMLPSYT 337
           SY  Y   ++ +    + ++  CL D      VFWK    +   F+L K +LP Y+
Sbjct: 464 SYEAYRKQQHRWHSGPMQLFRLCLPDIIKCKIVFWKKANLIFLFFLLRKLILPFYS 519


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,449,739
Number of Sequences: 37544
Number of extensions: 357403
Number of successful extensions: 953
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 952
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)