Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_G05
         (616 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.03 |apt1||adenine phosphoribosyltransferase |Schizosacc...   135   5e-33
SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|...    29   0.40 
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce...    27   2.2  
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch...    25   6.6  
SPAC1006.02 |||WD repeat protein, human GNB1L family|Schizosacch...    25   8.7  
SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual    25   8.7  

>SPAC23A1.03 |apt1||adenine phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score =  135 bits (326), Expect = 5e-33
 Identities = 62/136 (45%), Positives = 90/136 (66%)
 Frame = +1

Query: 121 DKQVDELKSKIKSYPDFPKEGILFWDIFSAIADGSTCKLIQSLLVQCVKAKFPEVEAVIG 300
           D +++ LK+K+  YPDFPK+GILF DI     D     ++  LL++ V+ +F  ++ ++G
Sbjct: 3   DDRINYLKNKLVQYPDFPKKGILFEDIMPIFQDPRAFGILIDLLLEAVETEFNNIDVIVG 62

Query: 301 LEARGFLFSFSLAAELGVGCIPVRKKGKLPGDVVSYAYDLEYGSDVLELQKNHIKPGVKC 480
           LEARGFLF  +LA       +PVRK  KLPGD+V  +Y+ EY +D   +QK  IKPG + 
Sbjct: 63  LEARGFLFGPTLALRANCAFVPVRKPNKLPGDLVVVSYNKEYSTDSFAIQKGTIKPGQRV 122

Query: 481 LIIDDLIATGGSITAA 528
           LI+DD++ATGG+  AA
Sbjct: 123 LIVDDILATGGTALAA 138


>SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 700

 Score = 29.5 bits (63), Expect = 0.40
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 266 FTHWTRRLCISLHVLPSAIAEKISQNKIP 180
           FT W R   +  H LP+ +A+ ++Q  +P
Sbjct: 129 FTPWLRPRVVETHYLPTFVAKSLNQTTVP 157


>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 413

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -3

Query: 377 FFLTGMQPTPSSAANEKEKRKPRASKPITASTS 279
           + L  MQPTP+S+   ++  +P  S P  +++S
Sbjct: 4   YALPSMQPTPTSSIPLRQMSQPTTSAPSNSASS 36


>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 219

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 357 LHTSQEEREASRRCCIIC 410
           ++ S+ E E S +CC+IC
Sbjct: 202 VNNSKTEDEVSTKCCVIC 219


>SPAC1006.02 |||WD repeat protein, human GNB1L
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 368

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 242 CISLHVLPSAIAEKISQNKIPSFGKS 165
           CI LH  PS+IA+ +     P F K+
Sbjct: 269 CICLHPTPSSIADDLGSLPHPIFRKT 294


>SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -3

Query: 266 FTHWTRRLCISLHVLPSAIAEKISQNKIP 180
           FTHW+RRL ++   LP A   K S N +P
Sbjct: 409 FTHWSRRL-LTFQRLPRAHDSK-SLNLLP 435


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,520,241
Number of Sequences: 5004
Number of extensions: 49740
Number of successful extensions: 145
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)