Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_G04
         (351 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.08c |rpl3401|rpl34, rpl34-1|60S ribosomal protein L34|S...    95   3e-21
SPCC1322.15 |rpl3402|rpl34, rpl34-2|60S ribosomal protein L34|Sc...    91   5e-20
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi...    27   1.1  
SPAC2E1P5.03 |||DNAJ domain protein Erj5|Schizosaccharomyces pom...    26   1.5  
SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p...    25   2.6  
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti...    25   3.4  
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    24   6.0  
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|...    24   6.0  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    24   7.9  
SPAC22A12.02c |mug103||sequence orphan|Schizosaccharomyces pombe...    24   7.9  
SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1 |Sc...    24   7.9  

>SPAC23A1.08c |rpl3401|rpl34, rpl34-1|60S ribosomal protein
           L34|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 112

 Score = 95.1 bits (226), Expect = 3e-21
 Identities = 45/94 (47%), Positives = 62/94 (65%)
 Frame = +1

Query: 10  MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 189
           M QR+T+RRRL+YNT+SN+ RI++TPG  + Y ++KK   IPRCG     L+GI   RP 
Sbjct: 1   MAQRVTYRRRLAYNTRSNRTRIIKTPGNNIRYLHIKKLGTIPRCGDTGVPLQGIPALRPR 60

Query: 190 QRSRLCYRKKTVKRVYGGVLCHKCGEAAHRRSFL 291
           + +RL + KKTV+R YGG L     +    R+FL
Sbjct: 61  EFARLSHNKKTVQRAYGGCLSANAVKDRIVRAFL 94



 Score = 35.9 bits (79), Expect = 0.002
 Identities = 20/30 (66%), Positives = 21/30 (70%)
 Frame = +2

Query: 257 NAVKQRIVGAFLIEEQNIVKVLKAQQASIK 346
           NAVK RIV AFLIEEQ IVK    Q +S K
Sbjct: 83  NAVKDRIVRAFLIEEQKIVKQKLKQLSSQK 112


>SPCC1322.15 |rpl3402|rpl34, rpl34-2|60S ribosomal protein
           L34|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 111

 Score = 91.1 bits (216), Expect = 5e-20
 Identities = 43/94 (45%), Positives = 61/94 (64%)
 Frame = +1

Query: 10  MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 189
           M QR+T+RRRL+YNT+SN+ RI++TPG  + Y ++KK   IPRCG     L+GI   RP 
Sbjct: 1   MAQRVTYRRRLAYNTRSNKTRIIKTPGNNIRYLHIKKLGTIPRCGDTGVPLQGIPALRPR 60

Query: 190 QRSRLCYRKKTVKRVYGGVLCHKCGEAAHRRSFL 291
           + +RL + +K V+R YGG L     +    R+FL
Sbjct: 61  EFARLSHNQKKVQRAYGGCLSANAVKDRIVRAFL 94



 Score = 35.5 bits (78), Expect = 0.002
 Identities = 21/30 (70%), Positives = 22/30 (73%)
 Frame = +2

Query: 257 NAVKQRIVGAFLIEEQNIVKVLKAQQASIK 346
           NAVK RIV AFLIEEQ IVK  K +Q S K
Sbjct: 83  NAVKDRIVRAFLIEEQKIVK-QKLKQMSQK 111


>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
           Air1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +1

Query: 31  RRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPR 138
           RR  + N KS+++R    PG  L  +   KPK   R
Sbjct: 244 RREQNRNQKSSKQRPFHKPGNSLASRLGSKPKSFKR 279


>SPAC2E1P5.03 |||DNAJ domain protein Erj5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 303

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +1

Query: 31  RRRLSYNTKSN-QRRIVRTPGGRLVY 105
           R+  SY T +   +RIV+ PGGR +Y
Sbjct: 161 RQHESYATSARGSKRIVQVPGGRRIY 186


>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 607

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 283 SDDALLHRICDREHLHKR 230
           SD  + H ICDR H+ ++
Sbjct: 395 SDPVITHHICDRPHISQK 412


>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
           subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 125 LGFLTYWYTKRPPGVRTILL 66
           +GFL Y+Y K P G R  +L
Sbjct: 133 VGFLPYFYVKAPVGFRPEML 152


>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 12/48 (25%), Positives = 21/48 (43%)
 Frame = +1

Query: 103 YQYVKKPKKIPRCGQCKSKLRGIQPARPAQRSRLCYRKKTVKRVYGGV 246
           Y    +P +  + GQ     + +QP +P Q ++       V+ V  GV
Sbjct: 368 YNQQSQPVQSYQSGQSTQHFQPVQPIQPVQSTQYYQPSSPVQPVQNGV 415


>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +1

Query: 136 RCGQCKSKLRGIQPARPAQRSR 201
           RC +CK   +G    RP  R R
Sbjct: 341 RCSRCKKSKKGCDRQRPCGRCR 362


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +1

Query: 238 GGVLCHKCGEAAHRRSFL-DRRTEHRESPKSAT 333
           G ++C KCG   H R ++ D   E+ +   SA+
Sbjct: 825 GLLVCFKCGTCVHERCYVCDDYAENEQMLVSAS 857


>SPAC22A12.02c |mug103||sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 124

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = -1

Query: 300 SSIKKAPTMRCFTAFVTENTSINA--LHRLL 214
           +SI KAP    F A +++NTS N+  +H+ L
Sbjct: 32  TSIYKAPPPYSFVAGLSKNTSSNSFVIHKCL 62


>SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -2

Query: 143 PHLGIFLGFLTYWYTKRPPGVRT 75
           PH+G +LG L  W   +    RT
Sbjct: 26  PHIGNYLGSLKQWVQLQEEAART 48


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,409,669
Number of Sequences: 5004
Number of extensions: 25768
Number of successful extensions: 79
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)