Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_G02
(603 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom... 284 6e-78
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr... 29 0.69
SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces pombe... 29 0.69
SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce... 27 2.1
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 26 3.7
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|... 26 3.7
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom... 26 3.7
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 26 3.7
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 26 3.7
SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces... 25 6.4
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc... 25 6.4
>SPAC6G10.08 |idp1||isocitrate dehydrogenase
Idp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 418
Score = 284 bits (697), Expect = 6e-78
Identities = 131/202 (64%), Positives = 158/202 (78%), Gaps = 2/202 (0%)
Frame = +2
Query: 2 IIWAKIKEKLIFPYVKLDCLYYDLGLPHRDATDDQVTIDAAHAILKHNVGIKCATITPDE 181
+IW I+EKL+ PY+ + YYDLG+ RD T+DQ+T+DAA AILK++VGIKCATITPDE
Sbjct: 31 VIWKIIREKLVLPYMDIKLDYYDLGIEARDKTNDQITVDAAKAILKNDVGIKCATITPDE 90
Query: 182 QRVEEFKLKKMWLSPNGTIRNILGGTVFREPILCKSIPRVVPGWTKAIVIGRHAHGDQYK 361
RV+E+ LKKMW SPNGTIRNIL GTVFREPIL K+IP+ +PGWT I IGRHA GDQYK
Sbjct: 91 ARVKEYNLKKMWKSPNGTIRNILNGTVFREPILIKNIPKYIPGWTNPICIGRHAFGDQYK 150
Query: 362 AQDFVVPKPGKVELVYTAEDGTTEKRL--LYDFKTPGVVLGMYNIDESIRAFAHSSFQVA 535
+ D V PGK+EL +T + + K +Y+F GV + MYN D+SIR FAHSSFQ+A
Sbjct: 151 STDLVASGPGKLELSFTPKGNPSAKETYNVYEFNGSGVAMSMYNTDDSIRGFAHSSFQMA 210
Query: 536 LQKKWPLYLSTKNTILKRYDGR 601
LQKK PLYLSTKNTILK+YDGR
Sbjct: 211 LQKKMPLYLSTKNTILKKYDGR 232
>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 697
Score = 28.7 bits (61), Expect = 0.69
Identities = 18/61 (29%), Positives = 32/61 (52%)
Frame = -3
Query: 352 IAVRVTSDHNGLSPSGYYPRYTLTQYGLTEYSPTEDVTNCSIWTQPHLFQFELFNSLFIR 173
+A+ VT +HNGLS + LTQ+ + +S T N S+ ++ + + F S ++
Sbjct: 8 VALHVTLNHNGLSYQRVFS--CLTQFPMLRHSSTAAKNNVSMISKFQAPEDKFFPSFSLK 65
Query: 172 S 170
S
Sbjct: 66 S 66
>SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 513
Score = 28.7 bits (61), Expect = 0.69
Identities = 19/58 (32%), Positives = 25/58 (43%)
Frame = -1
Query: 528 WKLEWANARIDSSILYMPRTTPGVLKSYKRRFSVVPSSAVYTSSTFPGFGTTKSCALY 355
WK + A L + R T LK Y++R SV P SS FG + +LY
Sbjct: 74 WKWRFTPASDKYDYLLIDRCTVS-LKRYRQRKSVYPMLMFLRSSLLRNFGNIGNSSLY 130
>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 242
Score = 27.1 bits (57), Expect = 2.1
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 98 DDQVTIDAAHAILKHNVGIKCATITPDEQRVEEFKLKKMWL 220
DD VT + AIL+H V + P E+ V E + ++W+
Sbjct: 56 DDGVTYIESAAILEHLVRKYGPSFKPSEEDVAELEKYELWM 96
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 26.2 bits (55), Expect = 3.7
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Frame = -3
Query: 271 LTEYSPTEDVTNCSIWTQ---PHLFQFELFNSLFIRSDSGT 158
++E++ TED+ NC TQ P L +EL + F +S +GT
Sbjct: 101 VSEFTTTEDIENCEETTQVLPPRLVVYELRLTNF-KSYAGT 140
>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
Length = 624
Score = 26.2 bits (55), Expect = 3.7
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Frame = -1
Query: 450 SYKRRFSVVPSSAVYTSST--FPGFGTTKS 367
SY RR+S PSS+ ++T F G GT+++
Sbjct: 6 SYARRYSQAPSSSNLRTTTFGFNGLGTSRT 35
>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1067
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -3
Query: 310 SGYYPRYTLTQYGLTEYSPTEDVTNC 233
SGY P GL E+S T D+ +C
Sbjct: 461 SGYLPMLMERLVGLLEFSDTPDIKSC 486
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 26.2 bits (55), Expect = 3.7
Identities = 12/36 (33%), Positives = 24/36 (66%)
Frame = -3
Query: 124 SRVNRHLIVSSVTVRQTQIIVKAVQLNIRENKLFLN 17
S VN++ +SS +++ Q+ V+A I+ +++FLN
Sbjct: 394 SLVNKNYEISSGKLKERQVAVRARIEGIKAHEMFLN 429
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 26.2 bits (55), Expect = 3.7
Identities = 29/95 (30%), Positives = 40/95 (42%), Gaps = 4/95 (4%)
Frame = -1
Query: 435 FSVVPSSAVYTSSTFPGFGTTKSCALY*SPCA*RPIT---MALVHPGTTLGIL-LHSMGS 268
FS +PSS TS+ FP + +L+ SP A RP+T + T + HS S
Sbjct: 252 FSSIPSSRHTTSNHFP--SNSAQSSLF-SPTA-RPLTARKLGFASSQTKSAVSNNHSRNS 307
Query: 267 RNTVPPRMLRIVPFGLSHIFFSLNSSTLCSSGVIV 163
M +P SH N S+L S +V
Sbjct: 308 SKDASFMMKSFIPSNRSHPQTQQNESSLFSDNSMV 342
>SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 735
Score = 25.4 bits (53), Expect = 6.4
Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 4/71 (5%)
Frame = -3
Query: 313 PSGYYPRYTLTQYGLTEYSPTEDVTNCSI-WTQPHLFQFELFNSLFIRSDSGTFDAD--- 146
P+G+ P+ L YGL Y E+ W F FN + + T D
Sbjct: 605 PNGWSPQQILAWYGLIRYGYEEETRRLVYRWLYTITKSFVDFNGIVVEKYDLTRPVDPHR 664
Query: 145 IMFQYGVSRVN 113
+ +YG VN
Sbjct: 665 VEAEYGNQGVN 675
>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1062
Score = 25.4 bits (53), Expect = 6.4
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = -1
Query: 543 FCKATWKLEWANARIDSSILYMPRTTPGVLKSYKRRFSVVPSS 415
+ K + E A RI +LY+P + + + ++ S+VPSS
Sbjct: 737 YVKESLLCESALRRILRILLYLPHSDMAITLQFFKQLSMVPSS 779
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,639,581
Number of Sequences: 5004
Number of extensions: 57808
Number of successful extensions: 200
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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