Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_F23
         (602 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40415-5|AAK39251.1|  655|Caenorhabditis elegans Hypothetical pr...    36   0.017
U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p...    33   0.21 
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt...    33   0.21 
AL023835-10|CAA19494.2|  691|Caenorhabditis elegans Hypothetical...    30   1.1  
Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical pr...    29   1.9  
AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical...    29   3.4  
Z81112-6|CAB03277.1|  673|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z77136-10|CAB00887.1|  673|Caenorhabditis elegans Hypothetical p...    28   5.9  

>U40415-5|AAK39251.1|  655|Caenorhabditis elegans Hypothetical
           protein K02G10.5 protein.
          Length = 655

 Score = 36.3 bits (80), Expect = 0.017
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +3

Query: 387 IEKCAENCISTPEYNPVCGSDNK-TYKNQGRLFCAQNCGVKVTLARQAPC 533
           +E C+ENC     +NPVC  D+K T+ +     CA   G+K   +    C
Sbjct: 442 LETCSENCHCDSFFNPVCSEDSKLTFLSPCHAGCADMPGIKFGASNWTNC 491


>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
           protein F41G3.12 protein.
          Length = 1483

 Score = 32.7 bits (71), Expect = 0.21
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = +3

Query: 417 TPEYNPVCGSDNKTYKNQGRL 479
           T E+  VCGSD KTY N+ RL
Sbjct: 469 TDEFKEVCGSDGKTYSNECRL 489



 Score = 29.5 bits (63), Expect = 1.9
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 393 KCAENCISTPEYNPVCGSDNKTYKNQ 470
           KC+E C     +  VCG+D KTY N+
Sbjct: 318 KCSEQCTMNSAH--VCGTDGKTYLNE 341


>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
           protein) homologfamily member protein.
          Length = 1473

 Score = 32.7 bits (71), Expect = 0.21
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = +3

Query: 417 TPEYNPVCGSDNKTYKNQGRL 479
           T E+  VCGSD KTY N+ RL
Sbjct: 477 TDEFKEVCGSDGKTYSNECRL 497



 Score = 29.5 bits (63), Expect = 1.9
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 393 KCAENCISTPEYNPVCGSDNKTYKNQ 470
           KC+E C     +  VCG+D KTY N+
Sbjct: 326 KCSEQCTMNSAH--VCGTDGKTYLNE 349


>AL023835-10|CAA19494.2|  691|Caenorhabditis elegans Hypothetical
           protein Y37A1B.11 protein.
          Length = 691

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 14/54 (25%), Positives = 28/54 (51%)
 Frame = +1

Query: 322 KHRYQVKGKHQLLALVEHHDKQLRNARRIAFQHQNTTPCVVAIIKLTKTREDYF 483
           + R++ + +H   AL +H  ++L   +R A     +  CV+++IK   + E  F
Sbjct: 81  EQRHRRRRRHNETALEDHLSEKLSREKRAAAHIMRSRKCVISVIKKMSSMECSF 134


>Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical
           protein F29G6.1 protein.
          Length = 1170

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +3

Query: 405 NCISTPEYNPVCGSDNKTYKNQGRLFCAQ 491
           +C       PVCG+DN TY N   L C Q
Sbjct: 18  DCDCPSVIRPVCGTDNVTYNNLCFLRCVQ 46



 Score = 29.1 bits (62), Expect = 2.6
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 378 RQTIEKCAENCISTPEYNPVCGSDNKTYKN 467
           R + + C  NC +T E++PVC ++   Y+N
Sbjct: 109 RCSSKDCNHNCTNT-EFDPVCDTNGSVYRN 137


>AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical
            protein Y26D4A.9 protein.
          Length = 1435

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = -3

Query: 558  YKITLMKTGTGLAWPKSL*LHNFGHKIVFPGFCKFYYRYHTRGCILVLKCNS 403
            ++  L KTG  L   K + ++NF  K +  G C    RY       + KCN+
Sbjct: 946  WEAMLKKTGVKLQTIKDIEMYNFIEKGIRGGICNAMLRYSRANNRHLKKCNT 997


>Z81112-6|CAB03277.1|  673|Caenorhabditis elegans Hypothetical
           protein ZC376.3 protein.
          Length = 673

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = +3

Query: 402 ENCISTPEYNPVCGSD-NKTYKN 467
           +  + T EY P C SD  KTYKN
Sbjct: 73  DGILETKEYKPACMSDAKKTYKN 95


>Z77136-10|CAB00887.1|  673|Caenorhabditis elegans Hypothetical
           protein ZC376.3 protein.
          Length = 673

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = +3

Query: 402 ENCISTPEYNPVCGSD-NKTYKN 467
           +  + T EY P C SD  KTYKN
Sbjct: 73  DGILETKEYKPACMSDAKKTYKN 95


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,686,486
Number of Sequences: 27780
Number of extensions: 332361
Number of successful extensions: 831
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)