Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_F21
(367 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 169 9e-44
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 96 2e-21
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 90 1e-19
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 84 6e-18
SPBC19G7.16 |iws1||transcription elongation factor complex subun... 27 0.91
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 26 2.1
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 25 4.9
SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz... 24 6.4
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun... 24 8.5
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 169 bits (412), Expect = 9e-44
Identities = 71/96 (73%), Positives = 84/96 (87%)
Frame = +1
Query: 79 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 258
MREIVHIQAGQCGNQ+GA FW I+DEHG+D G YHG S+ Q ER+NVY+NEA+GGKYV
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYV 60
Query: 259 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSG 366
PRA+LVDLEPGTMD+V+SG FG +FRPDN ++GQSG
Sbjct: 61 PRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSG 96
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 95.9 bits (228), Expect = 2e-21
Identities = 38/95 (40%), Positives = 66/95 (69%)
Frame = +1
Query: 82 REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVP 261
REI+ +QAGQCGNQIG++FW+ + EHGI P G + ++R +V++ ++ +Y+P
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTRYIP 62
Query: 262 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSG 366
RAIL+DLEP ++++ S +G ++ P+N + ++G
Sbjct: 63 RAILIDLEPRVVNNILSDTYGSLYNPENILITKNG 97
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 89.8 bits (213), Expect = 1e-19
Identities = 41/96 (42%), Positives = 58/96 (60%), Gaps = 2/96 (2%)
Frame = +1
Query: 79 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLER--INVYYNEASGGK 252
MREI+ I GQ G QIG WE+ EHGI P G + ++ Q + +++E GK
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60
Query: 253 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ 360
YVPR+I VDLEP +D VR+GP+ +F P+ + G+
Sbjct: 61 YVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGK 96
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 84.2 bits (199), Expect = 6e-18
Identities = 39/100 (39%), Positives = 57/100 (57%), Gaps = 6/100 (6%)
Frame = +1
Query: 79 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTG------AYHGDSDLQLERINVYYNEA 240
MRE++ + GQ G QIG WE+ EHGI P G H ++ + +++E
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLNDGFGTFFSET 60
Query: 241 SGGKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ 360
GK+VPR+I VDLEP +D VR+GP+ +F P+ V G+
Sbjct: 61 GQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGK 100
>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 27.1 bits (57), Expect = 0.91
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = +1
Query: 118 NQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERI 219
N++G E+++++ +DPT A + DLQ++ +
Sbjct: 133 NELGENEEEVLTEQKQLDPTLAAKKELDLQMDAV 166
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 25.8 bits (54), Expect = 2.1
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +1
Query: 313 GPFGQIFRPDNFVFGQSG 366
GP+G +F P F+F +G
Sbjct: 157 GPYGTMFLPQQFIFDSNG 174
>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 867
Score = 24.6 bits (51), Expect = 4.9
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -3
Query: 338 GRNICPKGPERTESMVPGSRSTRMARGTYLP 246
G NI PER + +S RMAR LP
Sbjct: 106 GNNINYPTPERLQKSSASRKSGRMARSQELP 136
>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 255
Score = 24.2 bits (50), Expect = 6.4
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -3
Query: 356 PKTKLSGRNICPKGPERTESMVPGSRS 276
PK L R I P GPE + + GS S
Sbjct: 25 PKEVLHTRVIVPNGPEEIKLRLVGSHS 51
>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1165
Score = 23.8 bits (49), Expect = 8.5
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = -2
Query: 333 EYLSERSRTNRVHGAGLEVDEDGAGHVLASGGLIVINIDALKLQVRIAVVCTG 175
EY+ R + NR GA + A VLA+ +++ +I+ L+ R V G
Sbjct: 311 EYIGARVKVNRRAGANRLPPHEEALEVLAA--VVLAHINVFNLEFRPKAVYIG 361
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,313,860
Number of Sequences: 5004
Number of extensions: 22843
Number of successful extensions: 60
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -