Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_F20
         (551 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p...    29   0.46 
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    27   1.8  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    27   2.4  
SPCC1020.09 |||WD repeat protein, human WDR79 family|Schizosacch...    25   7.4  
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|...    25   7.4  
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    25   9.8  
SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces po...    25   9.8  
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom...    25   9.8  

>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 723

 Score = 29.1 bits (62), Expect = 0.46
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +2

Query: 182 EIPGKYLANSTPRPPEEQLIP 244
           +I   +LA STP P +EQLIP
Sbjct: 323 DINSNFLAKSTPLPEQEQLIP 343


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +2

Query: 146  IISIPFTTEFTSEIPGKYLANSTPRPPEEQLIPST*FSLIFINRYFDIIRSQD 304
            I  + F+ +F ++I     A        E+L      +LIF+ R+F+ IRS D
Sbjct: 2282 IDGVVFSLDFVTQISNALQAQLRSPVLSEELGMQVAKNLIFLTRWFNSIRSSD 2334


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 19/74 (25%), Positives = 34/74 (45%)
 Frame = -3

Query: 480 EVINFKKLNSQEVYQAGNNCYRLNLSSEQSIVMGTYKNSTGKIVNLLYYGKGEVKSLYRS 301
           E+I+FK++NS+       + + L + S++      Y +S   IV L    + ++K     
Sbjct: 101 EMIDFKQINSEFFLSHRQHGFVLFIDSKKKPRQSFYTDSATSIVQLSKKYRNKIKFKSVD 160

Query: 300 CDRIISKYLFIKIN 259
           C   + K   I IN
Sbjct: 161 CASSLEKCEEIGIN 174


>SPCC1020.09 |||WD repeat protein, human WDR79
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 399

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -3

Query: 426 NCYRLNLSSEQSIVMGTYKNSTG 358
           +C+ LN    +++ +GTY N  G
Sbjct: 213 SCFSLNPMDSKTLAVGTYSNRVG 235


>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 540

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
 Frame = -3

Query: 432 GNNCYRLNLSSEQSIVMGTYKNSTGKI--VNLLYYGKGEVKSLYR--SCDRIISKYLFIK 265
           G    RL + +++SI+M  +    GKI  +N  + G  + K L    + D++  K   + 
Sbjct: 395 GMELARLTVVAKESIIMDVFIKPKGKILSLNTRFSGIHDAKELESGITMDQMYIKIKELG 454

Query: 264 INENYVL 244
           +N+N +L
Sbjct: 455 MNKNTIL 461


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
           Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +2

Query: 371 LYVPITIDCSDDKFR 415
           LY+   IDCS+D+FR
Sbjct: 276 LYMKRNIDCSEDEFR 290


>SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 558

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +3

Query: 45  IYYLVKYK*SIHTINNKIFLKV*VD-SLGYLHVQTLYRFRSRPN 173
           ++ LVKY  SIH++ ++ F ++    S   +H + L  F S  N
Sbjct: 262 VFNLVKYVLSIHSVPSRTFFEMASHFSNNKMHKERLQEFSSYKN 305


>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 892

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = -3

Query: 528 YAVYFCPPNQRQREDC-EVIN-FKKLNSQEVYQAGNNCYRLNLSSEQSIV 385
           YA  F P  +   E C E++  +K+L   +   AG N YR+ +   +S++
Sbjct: 658 YARTFKP--KLNTESCAEIVKKYKQLRMDDAQGAGKNSYRITVRQLESMI 705


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,219,607
Number of Sequences: 5004
Number of extensions: 46561
Number of successful extensions: 115
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)