Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_F20
(551 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0055 + 14122821-14123073,14123181-14123402,14124613-141246... 33 0.20
07_01_0987 + 8320205-8320472,8321549-8321690,8321773-8321893,832... 29 3.3
06_03_0577 + 22461831-22462023,22462378-22463160,22463380-224649... 28 4.3
02_02_0571 - 11664292-11664809,11664900-11665750,11665837-11666468 27 7.5
02_01_0705 - 5259949-5263887,5266207-5266509 27 7.5
10_08_0911 - 21499196-21499236,21499368-21499488,21499665-214997... 27 10.0
05_03_0679 + 16879370-16879400,16879586-16879716,16880178-168802... 27 10.0
01_06_1795 - 39925019-39926029,39926265-39926408,39927200-399272... 27 10.0
>03_03_0055 +
14122821-14123073,14123181-14123402,14124613-14124650,
14125117-14125231,14125357-14125508,14125626-14125899,
14126021-14126244
Length = 425
Score = 32.7 bits (71), Expect = 0.20
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +1
Query: 52 ISLSTNKVYIQLTIKYFLRFKLTVWATFTSRH 147
I LS N Y+ + IK+F+R ++T W F +H
Sbjct: 177 IKLSENAPYMFIVIKWFIRNQITDWLVFERKH 208
>07_01_0987 +
8320205-8320472,8321549-8321690,8321773-8321893,
8322190-8322264,8322784-8322846,8322934-8323086
Length = 273
Score = 28.7 bits (61), Expect = 3.3
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = -1
Query: 296 IELYRSTCL*RLTRIMCSVLTVLLVDVVCYWRGICQGF 183
+++ R T L + +I VL +LL+ V+ W +CQGF
Sbjct: 232 VKIRRKTWLQNM-KIKLVVLGILLLLVIIVWVSVCQGF 268
>06_03_0577 +
22461831-22462023,22462378-22463160,22463380-22464936,
22465082-22465449
Length = 966
Score = 28.3 bits (60), Expect = 4.3
Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = -3
Query: 426 NCYRLN-LSSEQSIVMGTYKNSTGKIVNLLYYG 331
N Y L+ L ++++ GT +S GK++NL+Y G
Sbjct: 218 NIYGLHSLRLTENMLTGTIPSSLGKLINLVYIG 250
>02_02_0571 - 11664292-11664809,11664900-11665750,11665837-11666468
Length = 666
Score = 27.5 bits (58), Expect = 7.5
Identities = 17/65 (26%), Positives = 28/65 (43%)
Frame = -3
Query: 531 TYAVYFCPPNQRQREDCEVINFKKLNSQEVYQAGNNCYRLNLSSEQSIVMGTYKNSTGKI 352
T + C + E KL S E+ G+N NL+S G+Y + G+I
Sbjct: 321 TTTIESCQMMDKSTEKHHQTTLNKLESGEILSEGSNHKEKNLASLGGTRWGSYYTTLGRI 380
Query: 351 VNLLY 337
N+++
Sbjct: 381 -NMMW 384
>02_01_0705 - 5259949-5263887,5266207-5266509
Length = 1413
Score = 27.5 bits (58), Expect = 7.5
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +1
Query: 319 HFSFTIIK*IDNFPSTILVCTHNNRLLG*QI*TITVIASLIYL 447
HFS ++ + I NF + HNN L G I + SL YL
Sbjct: 906 HFSGSLDESISNFTKLTYLDLHNNSLTGRLPSAIARVTSLYYL 948
>10_08_0911 - 21499196-21499236,21499368-21499488,21499665-21499789,
21500187-21500418,21500488-21500668,21501342-21501438,
21501641-21501779,21502024-21502351,21502890-21503137,
21503270-21503543,21504200-21504291,21504451-21504521,
21505091-21505181,21506526-21507380,21507482-21507594,
21508007-21508074,21508655-21508835,21509084-21509186,
21509273-21509379,21510046-21511584,21511661-21511771,
21511856-21511908,21511988-21512063,21512147-21512366,
21512477-21512901,21513193-21513372,21513503-21515474
Length = 2680
Score = 27.1 bits (57), Expect = 10.0
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 164 TTEFTSEIPGKYLANSTPRPPEEQLIPST 250
TT TSEIPGK ++ PR ++ P++
Sbjct: 1972 TTNKTSEIPGKSADSTEPRRSNRRIQPTS 2000
>05_03_0679 +
16879370-16879400,16879586-16879716,16880178-16880255,
16880582-16880626,16880727-16880765,16881260-16881356,
16881528-16881937
Length = 276
Score = 27.1 bits (57), Expect = 10.0
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = -3
Query: 432 GNNCYRLNLSSEQSIVMGTYKNSTGKIVNLLYYGKGEVKSLYRSCDRIISKYLFIK 265
GN+C+ L++SS SI M S ++ +L G ++ + D +I L K
Sbjct: 175 GNHCFELSISSTFSIEMSL---SAITLLGMLNLGHSAIRVAFHDTDCLICSVLAAK 227
>01_06_1795 -
39925019-39926029,39926265-39926408,39927200-39927277,
39927722-39927838,39927925-39927981,39928492-39928623,
39928725-39928922,39929364-39929474,39929570-39929785,
39929879-39930064,39930590-39931192
Length = 950
Score = 27.1 bits (57), Expect = 10.0
Identities = 10/15 (66%), Positives = 14/15 (93%)
Frame = +2
Query: 203 ANSTPRPPEEQLIPS 247
AN+TP+P +EQ+IPS
Sbjct: 819 ANATPQPAKEQVIPS 833
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,636,937
Number of Sequences: 37544
Number of extensions: 273222
Number of successful extensions: 642
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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