Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_F20
         (551 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024828-2|AAU87812.1|  462|Caenorhabditis elegans Hypothetical ...    29   2.2  
Z83109-1|CAB05513.1|  339|Caenorhabditis elegans Hypothetical pr...    27   6.8  
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p...    27   6.8  
Z81479-10|CAB03945.2|  324|Caenorhabditis elegans Hypothetical p...    27   9.0  
U29612-4|AAA68803.1|  326|Caenorhabditis elegans Hypothetical pr...    27   9.0  
AY552606-1|AAS89253.1|  324|Caenorhabditis elegans heparan sulfa...    27   9.0  
AF000191-1|AAB52884.1|  533|Caenorhabditis elegans Hypothetical ...    27   9.0  

>AC024828-2|AAU87812.1|  462|Caenorhabditis elegans Hypothetical
           protein Y55F3BL.2 protein.
          Length = 462

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
 Frame = -3

Query: 465 KKLNSQEVYQAGNNCYRLNLSSE--QSIVMGTYKNSTGKIVNLLYYGKGEVKSLY 307
           KK  ++++  +G NC+    S++  +  V    KNS  K+  +++Y K   K+L+
Sbjct: 5   KKKTNKKLKNSGKNCFFFQFSAKYLEFSVNFPRKNSKKKLETIIFYEKNVEKTLF 59


>Z83109-1|CAB05513.1|  339|Caenorhabditis elegans Hypothetical
           protein F44G3.1 protein.
          Length = 339

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 8/14 (57%), Positives = 13/14 (92%)
 Frame = +2

Query: 350 TIFPVLFLYVPITI 391
           TI P++F+Y+P+TI
Sbjct: 259 TIIPIIFMYIPVTI 272


>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
           protein T19D12.1 protein.
          Length = 1844

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 155 IPFTTEFTSEIPGKYLANSTPRP 223
           IP TT+ +S  P  Y +N TP P
Sbjct: 366 IPSTTQTSSSAPSTYTSNFTPSP 388


>Z81479-10|CAB03945.2|  324|Caenorhabditis elegans Hypothetical
           protein C34F6.4 protein.
          Length = 324

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -3

Query: 297 DRIISKYLFIKINENYVLGINCSSGG 220
           +R++S Y F++  +NY +G+  S  G
Sbjct: 134 ERLLSHYYFLRYGDNYRIGLKRSRAG 159


>U29612-4|AAA68803.1|  326|Caenorhabditis elegans Hypothetical
           protein C09B8.5 protein.
          Length = 326

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = -3

Query: 462 KLNSQEVYQAGNNCYRLNLSSEQSIVMGTYKNST 361
           ++N ++    G NC  +++  E+ +V+  YK  T
Sbjct: 254 RINVRKTNWKGRNCLTIDMEGEKELVISWYKTGT 287


>AY552606-1|AAS89253.1|  324|Caenorhabditis elegans heparan sulfate
           2O-sulfotransferase protein.
          Length = 324

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -3

Query: 297 DRIISKYLFIKINENYVLGINCSSGG 220
           +R++S Y F++  +NY +G+  S  G
Sbjct: 134 ERLLSHYYFLRYGDNYRIGLKRSRAG 159


>AF000191-1|AAB52884.1|  533|Caenorhabditis elegans Hypothetical
           protein T23C6.3 protein.
          Length = 533

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 14/57 (24%), Positives = 32/57 (56%)
 Frame = -3

Query: 408 LSSEQSIVMGTYKNSTGKIVNLLYYGKGEVKSLYRSCDRIISKYLFIKINENYVLGI 238
           L SE + +M  +K  T ++   +   + ++KS+ + C  +++KY  +  N+ + +GI
Sbjct: 96  LFSEITAIMRRFKQLTEEMS--VETVEVKIKSMIKDCQEMLTKYTNLDSNDRFNIGI 150


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,193,446
Number of Sequences: 27780
Number of extensions: 257936
Number of successful extensions: 732
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)