Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_F19
         (504 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    27   1.6  
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy...    26   2.8  
SPCC13B11.01 |adh1|adh|alcohol dehydrogenase Adh1|Schizosaccharo...    26   2.8  
SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|ch...    25   4.9  
SPBC947.06c |||spermidine family transporter |Schizosaccharomyce...    25   4.9  
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    25   6.5  
SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces po...    25   6.5  
SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit L7|...    25   8.5  
SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit S...    25   8.5  
SPCPB16A4.06c |||sequence orphan|Schizosaccharomyces pombe|chr 3...    25   8.5  

>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 11/32 (34%), Positives = 13/32 (40%)
 Frame = -3

Query: 346 SLGCIPVNIGWRKFFRKSHRRGHIPRYSSRGC 251
           +L C P    WR FF       H P +  R C
Sbjct: 353 TLSCDPDYHSWRIFFGSDRCANHPPSFDERSC 384


>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = -1

Query: 108 PVAELLPSILAQRRSEEYRVYSFLCLNING 19
           PVA++  ++L ++ S  + + SF+ +N  G
Sbjct: 335 PVAQIFYNVLGKKGSMAFTILSFIIINFTG 364


>SPCC13B11.01 |adh1|adh|alcohol dehydrogenase
           Adh1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 350

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +1

Query: 121 AEKVYSPVCGSDGKTYENPCEFYCEEDKTHSNMTIVKNTACEVGIPCYC 267
           AE+   P     G T +   + YC  + TH+ + I ++   EV  P  C
Sbjct: 109 AEETICPHIQLSGYTVDGTFQHYCIANATHATI-IPESVPLEVAAPIMC 156


>SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 587

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -2

Query: 203 LSSSQ*NSHGFSYVLPSDPQTGL*TFSANTSRRWQ 99
           L+  Q +++G SYVL +DP      F+   +  W+
Sbjct: 289 LAYEQADANGISYVLATDPDADRFAFAEKINGAWR 323


>SPBC947.06c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 498

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 11/35 (31%), Positives = 14/35 (40%)
 Frame = +2

Query: 236 PHARWASPATVPWNMPPSVALTEKLTPTNVHWNAP 340
           P  R      V W MP  + +       N+HW AP
Sbjct: 364 PEQRLPLMMAVGWLMPAGIFVFAWTNSPNIHWIAP 398


>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 7/29 (24%)
 Frame = +3

Query: 219 DNREKHRMRGGHPLLLY-------LGICP 284
           DNR+   +R G P++LY       +G+CP
Sbjct: 697 DNRQVFMVRNGEPMILYPEESAYEMGLCP 725


>SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 596

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = -1

Query: 144 DGTIDFFRKYITPVAELLPSILAQRRSEEYRVYSFLCLNINGTNLEFQ 1
           D   D F  +   V EL P+I  + + E    Y  L + + G+N + +
Sbjct: 144 DDRFDIFAVFQDKVRELYPNIFKKLKVEYVNTYGLL-ITLEGSNKDLK 190


>SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit
           L7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 287

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +3

Query: 204 DTQQYDNREKHRMRGGHPLL 263
           D   Y NR   +MRG  PLL
Sbjct: 94  DNPYYKNRPPQKMRGNKPLL 113


>SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit
           Sfc6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 582

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = +1

Query: 148 GSDGKTYENPCEFYCEEDKTHSNMTIVKNTACEVGI 255
           G   K YENP  +  +ED       +++N   E  I
Sbjct: 2   GPKSKEYENPSSYKNDEDNDDDGDFVLENVMSEEDI 37


>SPCPB16A4.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 126

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 331 PVNIGWRKFFRKSH 290
           P+   WRK+FRK H
Sbjct: 113 PIAEAWRKYFRKVH 126


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,218,964
Number of Sequences: 5004
Number of extensions: 49791
Number of successful extensions: 124
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)