Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_F19
(504 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1575 - 27848977-27849095,27849254-27849302,27850270-278502... 36 0.024
01_06_1092 + 34469732-34470118 33 0.13
04_03_0862 + 20389903-20390247,20392408-20392483,20392924-20392979 31 0.69
08_01_0705 + 6231220-6231390,6231900-6231954,6232043-6232194,623... 29 1.6
11_02_0038 - 7631462-7634428,7635975-7636250 29 2.8
01_06_0582 + 30392297-30392677,30393786-30394039,30394175-303942... 28 3.7
08_02_0324 - 15766862-15766871,15767041-15767741 27 6.5
02_01_0317 - 2128660-2128776,2129281-2129364,2129463-2129543,213... 27 6.5
09_01_0053 + 873918-874411,875255-875492,875682-875702 27 8.6
08_01_0026 - 189876-190073,190473-190559,190654-190877,190961-19... 27 8.6
01_07_0379 + 43177978-43178572,43178643-43178674 27 8.6
>07_03_1575 -
27848977-27849095,27849254-27849302,27850270-27850287,
27850798-27851786,27852119-27852733,27852893-27852921,
27853990-27854453,27854530-27854654,27854743-27855025,
27855112-27856102,27856965-27857576,27857666-27858630
Length = 1752
Score = 35.5 bits (78), Expect = 0.024
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = -3
Query: 403 RQFSSLAFAIMFHLQEPV*SLGCIPVN--IGWRKFFRKSHRRGHIPRYSSRGCPPRMRCF 230
R FS F F L+ V +L CI VN I W F + H+ ++ G PP M C
Sbjct: 262 RSFSRQLFLSPFLLETFVAALRCIYVNPLIDWVHFSLLRAMKSHLEDLANEGDPPAMHCI 321
Query: 229 SRLSY 215
L++
Sbjct: 322 RNLNW 326
>01_06_1092 + 34469732-34470118
Length = 128
Score = 33.1 bits (72), Expect = 0.13
Identities = 16/27 (59%), Positives = 17/27 (62%)
Frame = +2
Query: 389 GAKLASLHPCICTREKDPVCGSDGVTY 469
G A L P C R DPVCG+DGVTY
Sbjct: 49 GGSEAQLCPVRCFRP-DPVCGADGVTY 74
>04_03_0862 + 20389903-20390247,20392408-20392483,20392924-20392979
Length = 158
Score = 30.7 bits (66), Expect = 0.69
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = -3
Query: 301 RKSHRRGHIPRYSSRGCPPRMRCFSRLSYCCVSCPLRSKIHTGSRTSYHLTRRRD 137
R+S RR + S+ P + + RL CC++ S + G H +RRD
Sbjct: 43 RESRRRCALGGASAASESPPLHLYQRLPKCCITSHRCSTLRAGYPADLHGQKRRD 97
>08_01_0705 +
6231220-6231390,6231900-6231954,6232043-6232194,
6232252-6232335,6232614-6232797,6232885-6232988,
6233109-6233183,6233366-6233405,6233495-6233577,
6233687-6233764,6233868-6234011,6234093-6234160,
6234831-6234945,6235045-6235201,6235311-6235408
Length = 535
Score = 29.5 bits (63), Expect = 1.6
Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Frame = +1
Query: 112 DVFAEKVYSPVCGSDGKTYENPCEFYCEEDKTHSNMTIVKNTACEVGIPCYCT-LEYAPV 288
++ E+ ++PV ++G TY+ P + HS + +P Y T +E +P+
Sbjct: 451 EILREEEFAPVKNANGATYDTPDSARLMLLRLHSRWVVAAGGFLTHSVPLYMTGVEVSPL 510
Query: 289 CGSYGKTYANQC 324
G+ C
Sbjct: 511 SSYAGENLEAIC 522
>11_02_0038 - 7631462-7634428,7635975-7636250
Length = 1080
Score = 28.7 bits (61), Expect = 2.8
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +1
Query: 178 CEFYCEEDKTHSNMTIVKNTACEVGIPCYCTLEYAPVCGSYGKTYANQCSLE-CTLKII 351
C + +E T ++T ++N E+ PC LE + GS+G+ Y + +LKI+
Sbjct: 802 CTTHTKESYTMEDITNIENVFDELKPPC--NLEDLSIAGSFGQRYPTWLGADLSSLKIL 858
>01_06_0582 +
30392297-30392677,30393786-30394039,30394175-30394298,
30394484-30394588,30395913-30396035
Length = 328
Score = 28.3 bits (60), Expect = 3.7
Identities = 13/39 (33%), Positives = 17/39 (43%)
Frame = +1
Query: 253 IPCYCTLEYAPVCGSYGKTYANQCSLECTLKIIPAPEDG 369
+ YCT V GK Y L TLK++P +G
Sbjct: 189 VASYCTKLSDTVSSEIGKAYGRTTYLVTTLKVVPRGTEG 227
>08_02_0324 - 15766862-15766871,15767041-15767741
Length = 236
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/45 (26%), Positives = 25/45 (55%)
Frame = +2
Query: 11 RFVPLIFKHKNE*TRYSSDRRCANILGNSSATGVMYLRKKSIVPS 145
+FV ++ +H + TRY + RC ++ +G + L ++S + S
Sbjct: 43 QFVYVLERHNSVWTRYETTSRCTDLTAKIIISGFVVLDRRSFMIS 87
>02_01_0317 -
2128660-2128776,2129281-2129364,2129463-2129543,
2130230-2130407,2130530-2130673,2130780-2130826,
2131149-2131205,2131989-2132087,2132301-2132423,
2132514-2132636,2132859-2132972,2133612-2133800,
2134408-2134574,2134707-2134791,2134891-2135085,
2135162-2135251,2135418-2135603,2135885-2135959,
2136757-2136957
Length = 784
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Frame = +1
Query: 259 CYCTLEYAPVCGSYGKTYANQCS---LECTLKIIPAPEDGT*W 378
C+C + Y P+C YGK + + LE ++ P + W
Sbjct: 282 CHCRMVYLPMCYIYGKRFVGPVTPIILELRKELYEVPYNEVDW 324
>09_01_0053 + 873918-874411,875255-875492,875682-875702
Length = 250
Score = 27.1 bits (57), Expect = 8.6
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +2
Query: 239 HARWASPATVPWNMPPSVALTEKLTPT 319
HA+W+ ATV + P + + E+L T
Sbjct: 192 HAKWSPAATVTFMYEPEIRINEELMET 218
>08_01_0026 -
189876-190073,190473-190559,190654-190877,190961-191261,
191369-191467,193465-193602,193691-193879
Length = 411
Score = 27.1 bits (57), Expect = 8.6
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = -1
Query: 381 SPSCSIFRSRYNL*GAFQ*TLVGVSFSVRATDGGIFQGTVAGDAHLACG 235
+P S+ ++ ++L G + V F +R+ GG T + HL CG
Sbjct: 290 APLVSMLKTCHDLSGNRWPNYIAVDFYMRSDGGGAPLATDIANGHLVCG 338
>01_07_0379 + 43177978-43178572,43178643-43178674
Length = 208
Score = 27.1 bits (57), Expect = 8.6
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -3
Query: 223 LSYCCVSCPLRSKIH-TGSRTSYHLTRRRDYRLF 125
L Y C C R+ T S+T +HL R +YR +
Sbjct: 157 LFYSCACCAFRNTATATSSKTIFHLHPRWEYRWY 190
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,201,191
Number of Sequences: 37544
Number of extensions: 351350
Number of successful extensions: 958
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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