Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_F18
(534 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 31 0.11
SPCC622.12c |||NADP-specific glutamate dehydrogenase |Schizosacc... 27 2.3
SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces pom... 27 2.3
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe... 26 4.1
SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo... 25 5.4
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 25 5.4
SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4 |Schiz... 25 5.4
SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr 1... 25 7.1
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa... 25 7.1
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar... 25 7.1
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 9.4
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo... 25 9.4
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc... 25 9.4
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 31.1 bits (67), Expect = 0.11
Identities = 23/89 (25%), Positives = 39/89 (43%)
Frame = -2
Query: 434 RSQEDLDNGISGNIGLNVDGNTERLVVESWLTNLEVVWVTSLNLFFGQEYTVSGIKLAIV 255
R QED + G N+ G E + E ++ L F G+ + +S + I+
Sbjct: 1109 RCQEDFERGWKANLPSGKAGEAEIMSDEYYVAAAIKRRGLGLVRFIGELFKLSMLSEKIM 1168
Query: 254 KECD*FLNDNIIDFNADEMKFLLRIRLQV 168
EC L N+ D +E++ L R+ + V
Sbjct: 1169 HECIKRLLGNVTDPEEEEIESLCRLLMTV 1197
>SPCC622.12c |||NADP-specific glutamate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 451
Score = 26.6 bits (56), Expect = 2.3
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +3
Query: 108 DPAFYQLYNRIVGYINAFKHYLKPYPQEKLHFVGVKINDVVVEKLVTFFD 257
+P F Q Y IVG I + K + + +P+ K + I + V+E VT+ D
Sbjct: 6 EPEFQQAYKEIVGSIESSKLF-EVHPELKRVLPIISIPERVLEFRVTWED 54
>SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 396
Score = 26.6 bits (56), Expect = 2.3
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -2
Query: 182 IRLQVMLECVNVTH-NPVI*LIECRVSKCGLVKVKRTGHEGVLVEWF 45
I Q L+ + TH NPV EC +S+C L K G E L + F
Sbjct: 233 ILFQNALDALPTTHGNPV----ECDISRCPLNACKIAGQETELADLF 275
>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 426
Score = 25.8 bits (54), Expect = 4.1
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +1
Query: 433 LSTTXMDSPSHWKKTGINSTNWIG 504
LS + S+W++T ++ TNW+G
Sbjct: 208 LSVKAIIFASYWQQTVLSITNWLG 231
>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
Sir2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 475
Score = 25.4 bits (53), Expect = 5.4
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +3
Query: 6 YEIVARHVLGAAPKPFDKHTFMPSALDFYQTALRD 110
Y +ARH L + FD HTF + FY T RD
Sbjct: 183 YARLARHGLSEPSEMFDIHTFRENPEIFY-TFARD 216
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 25.4 bits (53), Expect = 5.4
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = -2
Query: 389 LNVDGNTERLVVESWLTNLEVVWVTSLNLFFGQEYTVSGI---KLAIVKEC 246
LN+ TE ++ ++ +V V S N FFG + G+ K ++ ++C
Sbjct: 309 LNITRKTETILKSLKESSTPLVQVVSFNAFFGVMIAILGVQFFKASLNRQC 359
>SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 674
Score = 25.4 bits (53), Expect = 5.4
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +3
Query: 234 EKLVTFFDYSQFDATNSVFLTKKEIKTSYPHNFKVRQPRLNHKPFSVTID-VKSDIATD 407
E++V + QF+A + T+K + + P K R+ RL F +D + D ATD
Sbjct: 591 ERVVLLEAWKQFEAMHGTEDTRKHVSSLMPQVVKKRR-RLEDGSFEEYLDYLFPDTATD 648
>SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 339
Score = 25.0 bits (52), Expect = 7.1
Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 3/78 (3%)
Frame = -2
Query: 527 PRSYLVRE---PIQFVELMPVFFQCDGESXIVVLRSQEDLDNGISGNIGLNVDGNTERLV 357
P+S LV P +L P FFQC G + D GI+ L GN RL+
Sbjct: 246 PKSPLVNPLYYPTGHKDLPPSFFQCCGWDPL--------RDEGIAYEKALKAAGNETRLI 297
Query: 356 VESWLTNLEVVWVTSLNL 303
V + + V+ L+L
Sbjct: 298 VYEGVPHCFWVYYPMLSL 315
>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 25.0 bits (52), Expect = 7.1
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +1
Query: 115 HSISYITGLWVTLTHSSIT*SLILKRNFISSALKSMMLSLRN*SH 249
+S S I W T HSS+ +L R + S + ++ LRN H
Sbjct: 973 NSKSVIGENWTTCLHSSLVDNLGKYRKYDGSKILDILRVLRNKRH 1017
>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 902
Score = 25.0 bits (52), Expect = 7.1
Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Frame = +1
Query: 40 HLNHSTSTPSCPVRLTF--TKPHFETLHSISYITGLWVTLT 156
HL S STPS LTF T + T H LW L+
Sbjct: 605 HLIDSISTPSVCTSLTFAPTGDYLATTHVDQVGISLWTNLS 645
>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 682
Score = 24.6 bits (51), Expect = 9.4
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +3
Query: 300 KEIKTSYPHNFKVRQPRLNHKPFSVTIDVKSDIATDAVIKIFLGPKYNDXGFPI 461
+ I+ SYP+ F R P+ H P + +D + A + V L P+ N P+
Sbjct: 606 QHIQYSYPNTFVNRFPQNIHHPSANLLDASA--ALNPVQNPLLMPQQNHEHSPL 657
>SPBC31F10.10c |||zf-MYND type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 24.6 bits (51), Expect = 9.4
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = +3
Query: 27 VLGAAPKPFDKHTFMPSALDFYQTALRDPAFYQLYNR 137
V G P PF T S+ Y LRD QL N+
Sbjct: 180 VNGDVPSPFGASTASSSSRRVYSVDLRDSGDVQLPNQ 216
>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 581
Score = 24.6 bits (51), Expect = 9.4
Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Frame = +3
Query: 126 LYNRIVGYINAFKHYLKP----YPQEKLHFVGVKINDVVVEKL 242
+Y +++G +N F+ ++ Y + + VKI+ +VV+KL
Sbjct: 385 VYYKLIGILNRFRKSVQRQEENYVNTRSTILSVKIHHIVVQKL 427
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,135,891
Number of Sequences: 5004
Number of extensions: 40867
Number of successful extensions: 112
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -