Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_F18
         (534 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0836 - 28088832-28089422,28089626-28089831,28089985-28090330     28   0.80 
11_02_0058 + 7879859-7879951,7880844-7881078,7881165-7881535,788...    27   7.2  
03_05_0974 + 29324025-29324117,29325064-29325298,29325385-293257...    27   7.2  
01_01_0106 + 788967-789555,790139-790162,790339-791411                 27   7.2  
02_05_0819 - 32014236-32016059                                         27   9.5  
01_05_0548 + 23149271-23149568,23149766-23149845,23150137-231502...    27   9.5  

>03_05_0836 - 28088832-28089422,28089626-28089831,28089985-28090330
          Length = 380

 Score = 27.9 bits (59), Expect(2) = 0.80
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -2

Query: 413 NGISGNIGLNVDGNTERLVVESWLTNLEVVWVTS 312
           NG +     +  G T+R+++ SWL+ LE+ + T+
Sbjct: 224 NGFTEAPETSNSGQTKRVLLSSWLSTLELAYTTA 257



 Score = 21.4 bits (43), Expect(2) = 0.80
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -2

Query: 281 VSGIKLAIVKECD*FLNDNIIDFNADEMKFL 189
           VSG ++A+  +    L+ N++  + DEM  L
Sbjct: 298 VSGTRIALGDDGSIALSRNVVVLHVDEMLLL 328


>11_02_0058 +
           7879859-7879951,7880844-7881078,7881165-7881535,
           7881648-7882304
          Length = 451

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 22/85 (25%), Positives = 36/85 (42%)
 Frame = +3

Query: 150 INAFKHYLKPYPQEKLHFVGVKINDVVVEKLVTFFDYSQFDATNSVFLTKKEIKTSYPHN 329
           +N F+  L PYP  ++HF+      V+  +       S  + TNS F     +    P +
Sbjct: 252 VNEFQTNLVPYP--RIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRH 309

Query: 330 FKVRQPRLNHKPFSVTIDVKSDIAT 404
            K     L ++   V  DV + +AT
Sbjct: 310 GKYMACCLMYRGDVVPKDVNAAVAT 334


>03_05_0974 +
           29324025-29324117,29325064-29325298,29325385-29325755,
           29325864-29326520
          Length = 451

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 22/85 (25%), Positives = 36/85 (42%)
 Frame = +3

Query: 150 INAFKHYLKPYPQEKLHFVGVKINDVVVEKLVTFFDYSQFDATNSVFLTKKEIKTSYPHN 329
           +N F+  L PYP  ++HF+      V+  +       S  + TNS F     +    P +
Sbjct: 252 VNEFQTNLVPYP--RIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRH 309

Query: 330 FKVRQPRLNHKPFSVTIDVKSDIAT 404
            K     L ++   V  DV + +AT
Sbjct: 310 GKYMACCLMYRGDVVPKDVNAAVAT 334


>01_01_0106 + 788967-789555,790139-790162,790339-791411
          Length = 561

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = +3

Query: 345 PRLNHKPFSVTIDVKSDIATDA--VIKIFLGPKYNDXGFPITLEENWH*FYELDWFTHKI 518
           P L  + F V I  KSD+ +    V+++  G +  D G      +N H  Y L+W   K+
Sbjct: 437 PELYSRNFGV-ISYKSDVYSFGMLVLEMVSGRRNLDPGI-----DNQHEVYFLEWIYEKV 490

Query: 519 TPGQN 533
             GQN
Sbjct: 491 FTGQN 495


>02_05_0819 - 32014236-32016059
          Length = 607

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 318 YPHNFKVRQPRLNHKPFSVTIDVKSDIATDAVIK 419
           YP     R  +   K  ++T+D K  +A DAV+K
Sbjct: 85  YPLGMGRRDEKGGSKILALTVDAKGSVAFDAVVK 118


>01_05_0548 +
           23149271-23149568,23149766-23149845,23150137-23150223,
           23150421-23150729,23150774-23150899,23151977-23152360,
           23152603-23152608
          Length = 429

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 17/78 (21%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
 Frame = +3

Query: 240 LVTFFDYSQFDATNSVFLTK-----KEIKTSYPHNFKVRQPRLNHKPFSVTIDVKSDIAT 404
           L   F +S F ++++  + +      ++KT    ++ ++ PRL +   S+  DV + +  
Sbjct: 64  LAAVFSFSSFTSSSNYVIRECLGSVLDLKTVATIDWSMKTPRLQYYTSSMVDDVFTRLGE 123

Query: 405 DAVIKIFLGPKYNDXGFP 458
           D  +K +    Y   G P
Sbjct: 124 DIKVKPWAHTVYGKNGIP 141


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,544,394
Number of Sequences: 37544
Number of extensions: 250474
Number of successful extensions: 556
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)