Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_F17
         (534 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre...    27   1.3  
SPBC6B1.05c |||ubiquitin-like conjugating enzyme|Schizosaccharom...    27   1.8  
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc...    26   4.1  

>SPBC19C2.09 |sre1||sterol regulatory element binding protein
           Sre1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 900

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 10/21 (47%), Positives = 18/21 (85%)
 Frame = -3

Query: 160 SIINNMVDVTLLNPLQMIFSW 98
           SII+++ DV +L+PL+++ SW
Sbjct: 682 SIISSLSDVLVLSPLEVLASW 702


>SPBC6B1.05c |||ubiquitin-like conjugating
           enzyme|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 649

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = -3

Query: 259 SFHNYSSYKMT*I*CHKDVIMIYDINEGDILRTSIINNMVDVTLLNPLQMIFSWLVFRQR 80
           + H+Y + +   I  H  + ++ D  E   L T +I+  +D  L+N      SWLV R  
Sbjct: 431 TMHDYETLENL-ISTHDAIFLLTDTRESRWLPT-VISTAMDKLLINSALGFDSWLVMRHG 488

Query: 79  S 77
           S
Sbjct: 489 S 489


>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 878

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 356 LYYDYYMSLVLAQNKNIITYFKILPSLYHI 445
           +YYD Y  L+ A N+NI+     L +L HI
Sbjct: 142 VYYDIYKLLMSASNENIVRQKSAL-ALLHI 170


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,797,678
Number of Sequences: 5004
Number of extensions: 31045
Number of successful extensions: 52
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)