Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_F17
         (534 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0775 - 5795329-5795801,5796582-5796720,5796810-5797049,579...    27   9.5  
02_05_0570 + 30070338-30071606                                         27   9.5  

>06_01_0775 -
           5795329-5795801,5796582-5796720,5796810-5797049,
           5797278-5797313,5797421-5797501,5797937-5797994,
           5799440-5799630
          Length = 405

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/49 (24%), Positives = 25/49 (51%)
 Frame = -3

Query: 247 YSSYKMT*I*CHKDVIMIYDINEGDILRTSIINNMVDVTLLNPLQMIFS 101
           Y+S     + CH D++ +Y   +   L + +I+ +V    + PL  +F+
Sbjct: 47  YASLGWRCLVCHPDLVALYLSEKAASLASGVISELVKEFKVKPLPTVFA 95


>02_05_0570 + 30070338-30071606
          Length = 422

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 8/32 (25%), Positives = 21/32 (65%)
 Frame = +1

Query: 232 FCNSSNYEMIFNSIVLRPNLHKCVYWVIISII 327
           +C  +  ++++N+ +LRP++ +  YW  I ++
Sbjct: 127 YCRLNGVQLLYNTALLRPSMDR--YWAKIPVV 156


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,445,640
Number of Sequences: 37544
Number of extensions: 141412
Number of successful extensions: 235
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)