Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_F17
         (534 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024791-25|AAK29888.4|  255|Caenorhabditis elegans Hypothetical...    29   2.8  
Z73972-10|CAA98263.2|  388|Caenorhabditis elegans Hypothetical p...    28   3.7  
AL021474-8|CAA16310.2|  388|Caenorhabditis elegans Hypothetical ...    28   3.7  
Z81564-9|CAB04575.1|  724|Caenorhabditis elegans Hypothetical pr...    27   8.5  
Z81489-1|CAB04005.2|  266|Caenorhabditis elegans Hypothetical pr...    27   8.5  

>AC024791-25|AAK29888.4|  255|Caenorhabditis elegans Hypothetical
           protein Y47G6A.21 protein.
          Length = 255

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +3

Query: 39  TSLIFASNDFQLSLL*RNTSQLK 107
           T+L+FA   +QLSL  RNT  LK
Sbjct: 17  TALLFAKKKYQLSLTGRNTDSLK 39


>Z73972-10|CAA98263.2|  388|Caenorhabditis elegans Hypothetical
           protein F15H10.4 protein.
          Length = 388

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 11/41 (26%), Positives = 24/41 (58%)
 Frame = +1

Query: 223 SKSFCNSSNYEMIFNSIVLRPNLHKCVYWVIISIIIMLVYL 345
           SK     ++YE IF SI L  +++  + W+++  + ++ +L
Sbjct: 125 SKCRLGYTDYERIFRSIQLILDVNFVILWILLPFVYLIAFL 165


>AL021474-8|CAA16310.2|  388|Caenorhabditis elegans Hypothetical
           protein F15H10.4 protein.
          Length = 388

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 11/41 (26%), Positives = 24/41 (58%)
 Frame = +1

Query: 223 SKSFCNSSNYEMIFNSIVLRPNLHKCVYWVIISIIIMLVYL 345
           SK     ++YE IF SI L  +++  + W+++  + ++ +L
Sbjct: 125 SKCRLGYTDYERIFRSIQLILDVNFVILWILLPFVYLIAFL 165


>Z81564-9|CAB04575.1|  724|Caenorhabditis elegans Hypothetical
           protein K05C4.9 protein.
          Length = 724

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -2

Query: 392 VRVLTTCNNHNKVDIFKYTNIIIMDI 315
           +R L   N +N VD+F+ TN+ ++D+
Sbjct: 210 IRYLEFANANNLVDLFQLTNLKVLDM 235


>Z81489-1|CAB04005.2|  266|Caenorhabditis elegans Hypothetical
           protein C55A1.1 protein.
          Length = 266

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +2

Query: 11  ISLKIIFSCHVFNIRFK*FSAVTSLTKYEPAENHLKRI 124
           I + ++++C VFNI F  FS  T++  + PA + L  I
Sbjct: 225 IPVTVLYTCCVFNIVFDTFSVATTIALF-PAIDPLPTI 261


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,531,592
Number of Sequences: 27780
Number of extensions: 162486
Number of successful extensions: 369
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 369
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)