Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_F14
         (684 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar...    28   1.4  
SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|c...    27   1.9  
SPAPB24D3.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   1.9  
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce...    27   3.3  
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    27   3.3  
SPBC1604.16c |||RNA-binding protein, G-patch type |Schizosacchar...    26   5.8  
SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr...    26   5.8  
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    25   7.7  
SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual    25   7.7  
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch...    25   7.7  

>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 902

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +1

Query: 619 TKTNRSSEVLHDVPEKSVPLFE 684
           TK++    ++HD PE +VP+FE
Sbjct: 849 TKSHEDVLLMHDTPEDTVPVFE 870


>SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 279

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +3

Query: 432 DDPNSARIANTYIENSGGGRVSNVLRSDDFFESRMILTNVISFKGL 569
           +D  + R  N  I++S G  +  +   DDF E  +    + SFK L
Sbjct: 138 NDDTTTRSNNQVIQSSCGNNLQRIEEPDDFVECPVCYAPLSSFKTL 183


>SPAPB24D3.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 300

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +3

Query: 165 IWTLMTGIALGASGESYRQLSTAFILPKKQNTLIDGY 275
           +WTL+  ++LG+   +Y   ++   +P   NTL+  Y
Sbjct: 5   VWTLLGALSLGSLTTAYGANASNSSVPTPDNTLVVSY 41


>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 855

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 411 SXKVLDFDDPNSARIANTYIENSGGGRVSNVLRS 512
           S K L F +P+ A  +NT++   G  R SNV R+
Sbjct: 6   SEKTLSFLNPSRAS-SNTHLSREGTNRSSNVTRT 38


>SPAC926.09c |fas1||fatty acid synthase beta subunit
            Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
 Frame = +2

Query: 218  ATQHSFHITEEAKHTYRRLQETH----KRRFGSGDECSVP 325
            A +HS  + E AK     + ETH     ++F +GDE  +P
Sbjct: 1061 AAKHSTKVNEPAKELLDGINETHIQHFIKKFYAGDEKKIP 1100


>SPBC1604.16c |||RNA-binding protein, G-patch type
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 199

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -1

Query: 534 FSIRRNRPNGAHSKRDRRQNSLYTCSRYVPNSDRRN 427
           F   R+  +  +SKRD    +   C  Y+PNS + N
Sbjct: 52  FENDRDNSHTMNSKRDEAGFACEVCQIYIPNSKKIN 87


>SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 599

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 576 FPFNKSDTVLEPFYNEDKQVIG 641
           +   KS  +++PFYNE +Q+ G
Sbjct: 554 YRLTKSSIIVQPFYNEWQQIPG 575


>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1040

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 19/52 (36%), Positives = 26/52 (50%)
 Frame = +3

Query: 174 LMTGIALGASGESYRQLSTAFILPKKQNTLIDGYKKLTNVVLDPATSAVSLT 329
           L + I   A  + +R L  A +L + +NT IDG   LT   L P T+  S T
Sbjct: 604 LSSNINTSAPMKRFRGLLKAVLLRRTKNTKIDGKPILT---LPPKTAVKSET 652


>SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = -3

Query: 529 DSKKSSERSTFETRPPPEFSIYVFAIRAEFGSSKSNTXIDAPKSLCSV 386
           +S + S  ST    PPP     + A+  EF + K++     P+S  +V
Sbjct: 260 ESPRRSVSSTPPVHPPPPVPQNLSAVNEEFDTKKNDFDSKLPESTPAV 307


>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 677

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +2

Query: 188 SFRSERRKLQATQHSFHI 241
           SFR+ER ++Q T   FHI
Sbjct: 120 SFRTERLQIQLTDQRFHI 137


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,915,683
Number of Sequences: 5004
Number of extensions: 61679
Number of successful extensions: 165
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)