Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_F12
         (216 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl modifica...    27   0.34 
SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces p...    26   0.59 
SPBC31F10.05 |mug37||sequence orphan|Schizosaccharomyces pombe|c...    25   1.0  
SPBC12D12.06 |srb11||cyclin CycC|Schizosaccharomyces pombe|chr 2...    25   1.8  
SPAPB17E12.11 |||N-oligosaccharyltransferase gamma subunit |Schi...    24   3.1  
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb...    23   7.2  
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    22   9.6  
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|...    22   9.6  
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    22   9.6  
SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces pombe...    22   9.6  

>SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl
           modification enzyme|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 666

 Score = 27.1 bits (57), Expect = 0.34
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 48  EPSRMDPNSEWLPNSI 95
           EP  +DPNS W PN +
Sbjct: 315 EPEGLDPNSWWYPNGL 330


>SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 509

 Score = 26.2 bits (55), Expect = 0.59
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -3

Query: 118 NYNCCPKGIEFGNHSELGSIRDGSRPEICSIRS 20
           +YN  P  + FGNH +LG   D SR E+  I S
Sbjct: 287 DYNV-PFAVNFGNHDDLG---DLSREELAKILS 315


>SPBC31F10.05 |mug37||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 217

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 26  DGTNLRTGTVPNGSQFRMVTEFNT 97
           +G   +T TVP   QF  V EFN+
Sbjct: 68  EGEKTKTETVPTRKQFPKVGEFNS 91


>SPBC12D12.06 |srb11||cyclin CycC|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 228

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = -1

Query: 150 LHLIRKNEGYKIIIVVQRVLN 88
           L LI+  + +K+I+ VQR+++
Sbjct: 200 LDLIKSTDAFKVILCVQRIIS 220


>SPAPB17E12.11 |||N-oligosaccharyltransferase gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +1

Query: 55  PEWIPIQNGYRIQYPLDNNYNF 120
           PE+  + N Y+++Y LD+   F
Sbjct: 73  PEFKALANSYKLKYGLDSGIRF 94


>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 605

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 168 RCLVWELHLIRKNEGYKIIIV 106
           R  +W+ HL+ K EG + I V
Sbjct: 20  RAELWQRHLLEKKEGDQSISV 40


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1402

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 45   REPSRMDPNSEWLPNSIP 98
            +EP R+D NS  L +S+P
Sbjct: 1341 KEPLRLDTNSLTLTSSMP 1358


>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
           5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 736

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -3

Query: 118 NYNCCPKGIEFGNHSELGSIRD 53
           N    PKG    NHSE   ++D
Sbjct: 257 NSKSAPKGTHKPNHSENAELKD 278


>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -1

Query: 162 LVWELHLIRKNEGYKIIIVVQRVLNSVTILNW 67
           LV EL+L+RK +     IV  +  + + +++W
Sbjct: 797 LVEELYLLRKKDRTLKSIVFSQFTSMLDLIHW 828


>SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 346

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -3

Query: 91  EFGNHSELGSIRDG 50
           +F  HS LG  RDG
Sbjct: 103 DFATHSALGGTRDG 116


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 987,266
Number of Sequences: 5004
Number of extensions: 17416
Number of successful extensions: 46
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 51
effective length of database: 2,107,274
effective search space used: 42145480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)