Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_F12
         (216 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0732 - 35788417-35788485,35788776-35788871,35788963-357891...    26   3.6  
09_02_0250 + 6266818-6267029,6267230-6267287,6267999-6268118,627...    26   4.8  
01_03_0192 + 13618129-13618393,13618652-13618721,13619052-136192...    25   6.3  
01_01_1004 - 7944214-7944227,7944641-7945769                           25   6.3  
06_02_0046 + 10928708-10928798,10929997-10930077,10930567-109306...    25   8.3  

>03_06_0732 -
           35788417-35788485,35788776-35788871,35788963-35789148,
           35789898-35789959,35790063-35790304,35790418-35791517
          Length = 584

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 21  ERMEQISGREPSRMDPNSEWLPNSIPF 101
           E+   + GR PS   P+S W+P S+ F
Sbjct: 481 EQQACMLGRAPSPRSPSSPWMPFSMLF 507


>09_02_0250 +
           6266818-6267029,6267230-6267287,6267999-6268118,
           6272359-6272511,6273381-6273586,6274280-6274733,
           6276573-6276610,6276923-6277046,6277184-6277246,
           6277350-6277412,6277526-6278152,6278267-6278294,
           6278373-6278413,6278689-6278851,6278987-6279039,
           6279217-6279262,6279373-6279444,6279578-6279741,
           6279968-6280099,6280249-6280565,6280721-6280892,
           6281009-6281107,6281275-6281349,6281446-6281504,
           6281647-6281836,6281982-6282020
          Length = 1255

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 46  GNRPEWIPIQNGYRIQYPLDNNYN 117
           G RP   PI+ GYR +    NN+N
Sbjct: 232 GYRPPLAPIRQGYRHRSSNSNNHN 255


>01_03_0192 +
           13618129-13618393,13618652-13618721,13619052-13619220,
           13619385-13619495,13619742-13619834,13619912-13620097
          Length = 297

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -1

Query: 108 VVQRVLNSVTILNWDPFGTV 49
           V+QR+ N++T+ +  P GTV
Sbjct: 195 VIQRISNNLTVCHKQPIGTV 214


>01_01_1004 - 7944214-7944227,7944641-7945769
          Length = 380

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 78  ILNWDPFGTVPVLRFVP 28
           ++  DPF   P LRFVP
Sbjct: 209 LITCDPFAPAPALRFVP 225


>06_02_0046 +
           10928708-10928798,10929997-10930077,10930567-10930685,
           10931275-10931894,10931992-10933184,10933280-10933359,
           10933751-10933846,10933931-10934004,10936007-10936151,
           10936323-10936487
          Length = 887

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +2

Query: 17  TRTDGTNLRTGTVPNGSQFRMVTEFNTLWTTII 115
           T  DGT   T  +P+ S  ++V +    W TI+
Sbjct: 149 TLEDGTATATEAIPDSSGMQIVGDIGGNWKTIM 181


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,268,257
Number of Sequences: 37544
Number of extensions: 108405
Number of successful extensions: 244
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 14,793,348
effective HSP length: 51
effective length of database: 12,878,604
effective search space used: 257572080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)