Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_F07
         (558 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    28   0.81 
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   4.3  
SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M...    26   4.3  
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ...    25   5.7  
SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit L3|S...    25   7.5  
SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun...    25   7.5  
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom...    25   7.5  
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc...    25   10.0 
SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces pomb...    25   10.0 

>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 28.3 bits (60), Expect = 0.81
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = -3

Query: 493 SVAPSNFNSSGST*ASRSTFLWLGMTTSDARPSPSERLFVPISTLYGVLGSTNAS 329
           SV PS+ N+  +   S +  +WL MT    +P PS  ++ P S    V+   + S
Sbjct: 252 SVTPSSINNHTAVPLSPTLAVWLPMTQPTFQP-PSANVYQPASNANQVITPVSIS 305


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 24/78 (30%), Positives = 36/78 (46%)
 Frame = -3

Query: 529 VTGSRSPSGPHCSVAPSNFNSSGST*ASRSTFLWLGMTTSDARPSPSERLFVPISTLYGV 350
           V+ +  PS     V+ S+ + S S   + STF  L  +TS ++PS S       ST    
Sbjct: 144 VSSAILPSSTSVEVSISSSSLSSSDPLTSSTFSSLSSSTSSSQPSVS-------STSSST 196

Query: 349 LGSTNASITCTSALSCNS 296
             S   + T +S LS +S
Sbjct: 197 FSSAAPTSTSSSYLSSSS 214


>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 685

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
 Frame = +1

Query: 250 DNIGLLEDEQTEQPA---ASYRTEPMYRLWR 333
           D+IGL ED  T QP    A +R  P    WR
Sbjct: 473 DSIGLGEDGPTHQPIETFAHFRAMPNINCWR 503


>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 803

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 12  RTGSRIAGKSDARVRRAQSLSRRSLNRTHHANNI 113
           RT ++      AR   AQS S +SLN T H++ I
Sbjct: 607 RTSTKSTSPIPARPFYAQSGSLQSLNTTQHSHQI 640


>SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit
           L3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 326

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = +2

Query: 116 RRCSRQRSPHPYSTTYGKTGRKTFKPISKTSLYSSQYRKG 235
           R C R     P      +TGRK+ +P+     YS  +  G
Sbjct: 223 RLCKRLSLKEPVYRIIAETGRKSREPVFVIGAYSGHHLLG 262


>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 214

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = +3

Query: 366 EIGTNNRSEGDGRASEVVIPSQRNVDLEAQVDPDELKLLGATEQCGPEGER 518
           +I T + +   G A EV   S    +  A  + DE+ L G+ E+  PE ER
Sbjct: 59  QIATYDLATLPGTAKEV---SAYGPEGAAAAEEDEIDLFGSDEEEDPEAER 106


>SPAC959.03c |||U3 snoRNP-associated protein
           Utp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 520

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 368 LNSIWSIRLYKRLHNLY 318
           L  +W +R YK LH+ Y
Sbjct: 288 LLKVWDLRTYKELHSYY 304


>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
           Sap155|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1188

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 15/58 (25%), Positives = 30/58 (51%)
 Frame = +3

Query: 282 RATSRELQDRADVQVMEAFVEPNTPYRVEIGTNNRSEGDGRASEVVIPSQRNVDLEAQ 455
           R + +++QDR      + +    TP RV+    + ++ +GR+   V+   R V+LE +
Sbjct: 116 RQSKKQIQDRESDYQKQRYDRQLTPTRVDAFQPDGTQSNGRSYAEVM---RQVELEKE 170


>SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 461

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 9/12 (75%), Positives = 12/12 (100%)
 Frame = +3

Query: 441 DLEAQVDPDELK 476
           DLE++VDPDEL+
Sbjct: 237 DLESEVDPDELE 248


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,243,391
Number of Sequences: 5004
Number of extensions: 44492
Number of successful extensions: 138
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)