Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_F07
         (558 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0303 + 2493388-2493954                                           31   0.47 
08_02_0988 + 23346696-23347523                                         31   0.82 
01_01_0359 + 2829325-2832076,2832223-2832593,2833335-2833695,283...    30   1.1  
10_02_0192 + 6517985-6518348,6518647-6518699,6519984-6520021,652...    29   2.5  
01_05_0282 - 20347915-20348874,20348968-20349012,20349568-203498...    29   2.5  
07_03_1427 + 26495072-26495148,26495323-26495468,26495581-264957...    29   3.3  
11_06_0761 + 27033773-27033816,27033900-27034122                       27   7.7  
06_03_0792 + 24658324-24658763,24659167-24659387,24659765-246598...    27   7.7  

>08_01_0303 + 2493388-2493954
          Length = 188

 Score = 31.5 bits (68), Expect = 0.47
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +2

Query: 113 LRRCSRQRSPHPYSTTYGKTGRKTFKPISKTSLYS 217
           L RCSR+R P P +TT   T R++   +   SL+S
Sbjct: 28  LHRCSRRRRPSPLTTTVALTRRRSPAAVRCFSLHS 62


>08_02_0988 + 23346696-23347523
          Length = 275

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 7/101 (6%)
 Frame = +3

Query: 180 KHSNRYQ--KRRCTHRSTAKVADTYR*Y--WIT*GRTNRATSRELQDRADVQVMEAFVEP 347
           K  N+Y+  ++R   +  A++ D  R    W+    T    +R   DRA V+      + 
Sbjct: 127 KKKNKYRGVRQRPWGKWAAEIRDPRRAVRKWLGTFDTAEEAARAY-DRAAVEFRGPRAKL 185

Query: 348 NTPYRVEIGTNNRSEGDGRA---SEVVIPSQRNVDLEAQVD 461
           N P+  ++  ++ S GD  A   S+ + PS R+ D + QV+
Sbjct: 186 NFPFPEQLSAHDDSNGDASAAAKSDTLSPSPRSADADEQVE 226


>01_01_0359 +
           2829325-2832076,2832223-2832593,2833335-2833695,
           2833799-2833868,2834021-2834108,2834325-2834580,
           2834758-2834883,2835217-2835425
          Length = 1410

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 21/66 (31%), Positives = 34/66 (51%)
 Frame = -3

Query: 493 SVAPSNFNSSGST*ASRSTFLWLGMTTSDARPSPSERLFVPISTLYGVLGSTNASITCTS 314
           S A +++NSSG++  +     W G+T S  RP+    L +P S L G L     ++T   
Sbjct: 43  SSALASWNSSGASFCN-----WEGVTCSRRRPTRVASLSLPSSNLAGTLSPAIGNLTFPR 97

Query: 313 ALSCNS 296
            L+ +S
Sbjct: 98  RLNLSS 103


>10_02_0192 +
           6517985-6518348,6518647-6518699,6519984-6520021,
           6522332-6522717,6523752-6523822,6524620-6524732,
           6525019-6525337,6525576-6525886,6526493-6527069,
           6530483-6530538,6531643-6532126
          Length = 923

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +1

Query: 214 LIAVPQRLQIPTDNIGLLEDEQTE-QPAASYRTEPM 318
           +I +P+R+    D+ G +E+E T  QPAA Y  + M
Sbjct: 856 IITMPRRMSYVEDDKGNIEEESTHAQPAAVYANKKM 891


>01_05_0282 -
           20347915-20348874,20348968-20349012,20349568-20349816,
           20350393-20350581,20351051-20351155,20351165-20351488,
           20351493-20351555
          Length = 644

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 19/62 (30%), Positives = 30/62 (48%)
 Frame = +3

Query: 354 PYRVEIGTNNRSEGDGRASEVVIPSQRNVDLEAQVDPDELKLLGATEQCGPEGERDPVTL 533
           P R E   + R+  D   + +VIPS   V+    V+  ++ + G  + CG   E+D   L
Sbjct: 452 PPRCEETASERAPADNSRA-IVIPSAEPVE---DVELSDIDVRGLCKMCGNPEEKDKRFL 507

Query: 534 VC 539
           VC
Sbjct: 508 VC 509


>07_03_1427 +
           26495072-26495148,26495323-26495468,26495581-26495729,
           26495829-26496224
          Length = 255

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +3

Query: 174 GGKH-SNRYQKRRCTHRSTAKVADTY 248
           GG+H S RY +RR  H ++AK A ++
Sbjct: 8   GGQHDSQRYSRRRGCHETSAKAAQSF 33


>11_06_0761 + 27033773-27033816,27033900-27034122
          Length = 88

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +1

Query: 214 LIAVPQRLQIPTDNIGLLEDEQTE-QPAASYRTEPM 318
           +I  P+R+    D+ G  E+E T  QPAA Y  + M
Sbjct: 21  IITTPRRMGYVEDDKGYAEEESTHAQPAAFYANKKM 56


>06_03_0792 +
           24658324-24658763,24659167-24659387,24659765-24659827,
           24659849-24660102
          Length = 325

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +3

Query: 387 SEGD-GRASEVVIPSQRNVDLEAQVDPDE 470
           ++GD G+ +EV  P     D+EA+VD D+
Sbjct: 111 TDGDSGKENEVATPDAEKEDVEAEVDGDD 139


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,510,176
Number of Sequences: 37544
Number of extensions: 316558
Number of successful extensions: 894
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)