Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_F06
(585 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0107 - 20883353-20883627,20883739-20883801,20884608-208847... 76 2e-14
08_01_0417 - 3692247-3692329,3692442-3692504,3693233-3693350,369... 75 6e-14
06_01_0108 - 860080-860162,860276-860338,860857-860974,861481-86... 71 7e-13
04_04_1623 - 34846056-34846223,34846547-34846644,34846738-348468... 52 3e-07
11_03_0183 - 11310671-11313625,11314243-11314287,11314550-11314717 29 2.1
08_02_0318 + 15710834-15711775 29 2.1
11_01_0768 - 6442332-6443792 28 6.3
09_06_0371 + 22615809-22617431,22618312-22618422,22619361-226194... 28 6.3
05_07_0157 - 28079181-28079720 27 8.3
>03_05_0107 -
20883353-20883627,20883739-20883801,20884608-20884725,
20885012-20885023
Length = 155
Score = 75.8 bits (178), Expect = 2e-14
Identities = 39/83 (46%), Positives = 51/83 (61%)
Frame = +2
Query: 47 MSLQEQFDQAAANVRNLKSVPSDSDLLELYALFKQATSGDADPANRPGLLDLRGKAKFDA 226
M LQE F++ A V+ L S+ D L LY L+KQAT GD + +RPG+ R +AK+DA
Sbjct: 1 MGLQEDFEEYAEKVKTLPESTSNEDKLILYGLYKQATVGDVN-TSRPGIFAQRDRAKWDA 59
Query: 227 WHKKAGTSKEDAQKAYIAKVEGL 295
W G SKE+A YI KV+ L
Sbjct: 60 WKAVEGKSKEEAMSDYITKVKQL 82
>08_01_0417 -
3692247-3692329,3692442-3692504,3693233-3693350,
3694084-3694095
Length = 91
Score = 74.5 bits (175), Expect = 6e-14
Identities = 39/84 (46%), Positives = 51/84 (60%)
Frame = +2
Query: 47 MSLQEQFDQAAANVRNLKSVPSDSDLLELYALFKQATSGDADPANRPGLLDLRGKAKFDA 226
M LQE F+Q A + L S+ + L LY L+KQAT GD + A RPG+ R +AK+DA
Sbjct: 1 MGLQEDFEQYAEKAKTLPESTSNENKLILYGLYKQATVGDVNTA-RPGIFAQRDRAKWDA 59
Query: 227 WHKKAGTSKEDAQKAYIAKVEGLV 298
W G SKE+A YI KV+ L+
Sbjct: 60 WKAVEGKSKEEAMSDYITKVKQLL 83
>06_01_0108 -
860080-860162,860276-860338,860857-860974,861481-861492
Length = 91
Score = 70.9 bits (166), Expect = 7e-13
Identities = 36/84 (42%), Positives = 50/84 (59%)
Frame = +2
Query: 47 MSLQEQFDQAAANVRNLKSVPSDSDLLELYALFKQATSGDADPANRPGLLDLRGKAKFDA 226
M LQE+F++ A + L S+ D L LY L+KQAT G RPG+ +L+ + K+DA
Sbjct: 1 MGLQEEFEEFAEKAKTLPDTISNEDKLLLYGLYKQATVGPVT-TGRPGIFNLKDRYKWDA 59
Query: 227 WHKKAGTSKEDAQKAYIAKVEGLV 298
W G SKE+A YI KV+ L+
Sbjct: 60 WKAVEGKSKEEAMADYITKVKQLL 83
>04_04_1623 -
34846056-34846223,34846547-34846644,34846738-34846829,
34847096-34847202,34847385-34847490,34848108-34848547
Length = 336
Score = 52.4 bits (120), Expect = 3e-07
Identities = 33/85 (38%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Frame = +2
Query: 53 LQEQFDQA----AANVRNLKSVPSDSDLLELYALFKQATSGDADPANRPGLLDLRGKAKF 220
L E F A AA+ + SVP + L +LY L+K AT G A +P L L+ +AK+
Sbjct: 90 LDEDFSAASAFVAASAASGTSVPEQAQL-QLYGLYKIATEGPC-TAPQPSALKLKARAKW 147
Query: 221 DAWHKKAGTSKEDAQKAYIAKVEGL 295
+AWHK E+A + YI V+ L
Sbjct: 148 NAWHKLGAMPTEEAMQKYITVVDEL 172
>11_03_0183 - 11310671-11313625,11314243-11314287,11314550-11314717
Length = 1055
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +2
Query: 101 SVPSDSDLLELYALFKQATSGDADPANRPGLLDLRGKAKFDAWHKKAGTSK 253
+VPS SDL+++++ + A+ AN + K + DA AG K
Sbjct: 972 AVPSRSDLIKIFSQYGPVNEAKAETANNANCAQVIFKRRMDAEAAFAGAGK 1022
>08_02_0318 + 15710834-15711775
Length = 313
Score = 29.5 bits (63), Expect = 2.1
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = -1
Query: 246 VPAFLCHASNLALPLK-SRRPGRLAGSASPDVACLNRAYSSSKSLSLGTDFRFLTLAA 76
+P H + L LP + PG+LA +A D C AY+++ ++L + L L+A
Sbjct: 153 LPFLSAHVAVLVLPAAVAPYPGQLAHAADVDARCAYPAYAAALLVALAALYAPLLLSA 210
>11_01_0768 - 6442332-6443792
Length = 486
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +2
Query: 74 AAANVRNLKSVPSDSDLLELYALFKQATSGDADPANRPGL 193
+ A V +K VP D LL ++A F Q G A +RP L
Sbjct: 148 SGAGVNTVK-VPEDEWLLAIHASFSQLLRGPAGGVSRPPL 186
>09_06_0371 + 22615809-22617431,22618312-22618422,22619361-22619453,
22619562-22619661,22619754-22619834,22620774-22621047,
22621254-22622069,22622921-22623029,22623509-22623602,
22623881-22623939,22624150-22624197
Length = 1135
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = +2
Query: 53 LQEQFDQAAANVRNLKSVPSDSDLLELYALFKQATSGDADPANRPGLLDLRGKAKFD 223
L + D A +R+L S+ DLL+ L K+ T+G+ + GL++ K++
Sbjct: 1041 LNYRIDMPDAEIRDLVSMKRWDDLLKSDQLTKELTNGNTFAGWKEGLINFPPTYKYE 1097
>05_07_0157 - 28079181-28079720
Length = 179
Score = 27.5 bits (58), Expect = 8.3
Identities = 23/63 (36%), Positives = 27/63 (42%)
Frame = -1
Query: 261 ASSFEVPAFLCHASNLALPLKSRRPGRLAGSASPDVACLNRAYSSSKSLSLGTDFRFLTL 82
A S +P F ++ A P R R G VAC + A SS K L LG LTL
Sbjct: 7 AVSSTLPLFHVRTASSA-PAALRFTTRGRGGGRHSVACNSTAASSPKVLELGDAIAGLTL 65
Query: 81 AAA 73
A
Sbjct: 66 EEA 68
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,358,450
Number of Sequences: 37544
Number of extensions: 286521
Number of successful extensions: 661
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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