Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_F05
         (429 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0429 - 20701107-20701534,20701628-20701847                       29   1.2  
04_04_0592 + 26477974-26479311                                         29   1.6  
02_05_0292 + 27581862-27581913,27582395-27582615,27582691-275830...    27   6.4  

>06_03_0429 - 20701107-20701534,20701628-20701847
          Length = 215

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = +2

Query: 176 TSPTPCLNNFPRSASPLPAPANYQATTASAA 268
           T+ TP     P S SP P+PA  +A TASAA
Sbjct: 158 TAATPPPPPPPPSPSPSPSPAPQEAATASAA 188


>04_04_0592 + 26477974-26479311
          Length = 445

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 25/72 (34%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
 Frame = +2

Query: 182 PTPCLNNFPRSASPLPAPANYQATTAS---AAXKRYK-YLRRLFKFNQMDFEFAAWQMVY 349
           PTP     P    PLP PA   +   S   A+ KR K  L+ L +       FAA +   
Sbjct: 89  PTPTTTTTPTPTPPLPPPAPPASPAKSNKKASAKRNKSLLKLLLRETPRTRRFAA-RAGE 147

Query: 350 LFISPQKVFRNF 385
           LF SP+   R F
Sbjct: 148 LFASPRPCTRRF 159


>02_05_0292 +
           27581862-27581913,27582395-27582615,27582691-27583087,
           27583645-27583730,27584229-27584292,27584395-27584507,
           27584998-27585036,27585037-27585177
          Length = 370

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = -3

Query: 187 RWRSGILHVCKIYLMVYLNYSIYFKTTNYMSVQITRKFTKLYNI 56
           RW+  + +     ++V++N+S      NY  +     FT LY +
Sbjct: 277 RWQQAVSNPVFHAILVFVNFSYTLMVLNYSCIGFQFVFTMLYTL 320


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,560,366
Number of Sequences: 37544
Number of extensions: 168053
Number of successful extensions: 609
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)