Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_F05
         (429 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48055-4|CAA88132.2|  301|Caenorhabditis elegans Hypothetical pr...    79   1e-15
Z81489-11|CAJ30223.1|  323|Caenorhabditis elegans Hypothetical p...    31   0.35 
Z83234-5|CAB70171.2|  640|Caenorhabditis elegans Hypothetical pr...    29   1.4  
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    29   1.9  
Z81082-3|CAB03095.2|  603|Caenorhabditis elegans Hypothetical pr...    28   3.3  
U80842-2|AAB37948.1|  322|Caenorhabditis elegans Serpentine rece...    27   4.3  
U28738-7|AAA68312.1|  341|Caenorhabditis elegans Hypothetical pr...    27   7.5  
U28738-6|AAT92056.1|  274|Caenorhabditis elegans Hypothetical pr...    27   7.5  
U28738-5|AAT92055.1|  342|Caenorhabditis elegans Hypothetical pr...    27   7.5  
U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog (hed...    26   10.0 

>Z48055-4|CAA88132.2|  301|Caenorhabditis elegans Hypothetical
           protein T07A5.2 protein.
          Length = 301

 Score = 79.4 bits (187), Expect = 1e-15
 Identities = 36/60 (60%), Positives = 41/60 (68%)
 Frame = +2

Query: 248 ATTASAAXKRYKYLRRLFKFNQMDFEFAAWQMVYLFISPQKVFRNFNYRKHTKSQFARDD 427
           A   SA  K  ++ RRL    QMDFEFA WQM+YL I P KV++NF YRK TK QFARDD
Sbjct: 55  AVRMSAFAKLSRFTRRLVHIRQMDFEFALWQMLYLLIQPSKVYKNFIYRKRTKDQFARDD 114


>Z81489-11|CAJ30223.1|  323|Caenorhabditis elegans Hypothetical
           protein C55A1.14 protein.
          Length = 323

 Score = 31.1 bits (67), Expect = 0.35
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
 Frame = -3

Query: 184 WRSGILHVCKIYLMVY---LNYSIYFKTTNYMSVQITRKF--TKLYNILHKSIYFAK*IA 20
           WR+GIL V  + + VY   L +  Y    NYM  + T  F  T  + ++ K  Y    I 
Sbjct: 15  WRNGILLVSAVLIFVYSVILPFYFYVNKINYMKDKTTLLFPITNHFCVMIKMAYMIFVIL 74

Query: 19  QCRL 8
            CR+
Sbjct: 75  ICRV 78


>Z83234-5|CAB70171.2|  640|Caenorhabditis elegans Hypothetical
           protein K09E4.2 protein.
          Length = 640

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 13/57 (22%), Positives = 28/57 (49%)
 Frame = -3

Query: 211 SWKVIKTRRWRSGILHVCKIYLMVYLNYSIYFKTTNYMSVQITRKFTKLYNILHKSI 41
           SW V  +  W S +LHVC + +  +L  +   +  + +S +  R+  +   +L + +
Sbjct: 387 SWNVYPSTWWSSALLHVCHVIIFWHLIVTRPARPGDSVSRETLRRLEQRQKMLEQEL 443


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
            C41A3.1 protein.
          Length = 7829

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -3

Query: 148  LMVYLNYSIYFKTTNYMSVQITRKFTKLYNILHKSIY 38
            L+V+ ++ + F T  Y+S   ++K T  YN+L    +
Sbjct: 3273 LIVFQSFKLSFSTKKYISDLFSKKVTFFYNLLQSKCF 3309


>Z81082-3|CAB03095.2|  603|Caenorhabditis elegans Hypothetical
           protein F42G4.3a protein.
          Length = 603

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +2

Query: 158 TNMKYSTSPTPCLNNFPRSASPLPAPANYQATTASA 265
           T +      +P +  +PR  +P  + ANY ATT+++
Sbjct: 361 TKLNQPADTSPSIVQYPRRQAPDSSRANYSATTSTS 396


>U80842-2|AAB37948.1|  322|Caenorhabditis elegans Serpentine
           receptor, class i protein51 protein.
          Length = 322

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -1

Query: 132 IIAFISKLLIICLYK*LGNLRNCIISYINLFILRNKLHNV 13
           IIA      + C +   G+LR  I   I LF+LR  +H+V
Sbjct: 251 IIAVPGFAFLACAFWATGDLRTIIEIIIVLFLLRGSIHSV 290


>U28738-7|AAA68312.1|  341|Caenorhabditis elegans Hypothetical
           protein T28D9.3a protein.
          Length = 341

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 187 RWRSGILHVCKIYLMVYLNYS 125
           RWR+  LHV  + L+ Y  YS
Sbjct: 109 RWRNNHLHVLFVRLLTYFGYS 129


>U28738-6|AAT92056.1|  274|Caenorhabditis elegans Hypothetical
           protein T28D9.3c protein.
          Length = 274

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 187 RWRSGILHVCKIYLMVYLNYS 125
           RWR+  LHV  + L+ Y  YS
Sbjct: 110 RWRNNHLHVLFVRLLTYFGYS 130


>U28738-5|AAT92055.1|  342|Caenorhabditis elegans Hypothetical
           protein T28D9.3b protein.
          Length = 342

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 187 RWRSGILHVCKIYLMVYLNYS 125
           RWR+  LHV  + L+ Y  YS
Sbjct: 110 RWRNNHLHVLFVRLLTYFGYS 130


>U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 7 protein.
          Length = 401

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +2

Query: 179 SPTPCLNNFPRSASPLPAP 235
           +P P L ++P++A P+PAP
Sbjct: 79  APAPPLASYPQNAVPVPAP 97


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,940,789
Number of Sequences: 27780
Number of extensions: 167007
Number of successful extensions: 476
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)