Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_F04
         (463 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5D6.09c |mug86||acetate transporter |Schizosaccharomyces pom...    26   3.2  
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos...    25   5.6  
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb...    25   5.6  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   7.4  
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    25   7.4  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    24   9.8  
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    24   9.8  

>SPAC5D6.09c |mug86||acetate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 304

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1

Query: 115 SYGCFWRVYDRVFL 156
           SYGCFW  Y  +F+
Sbjct: 157 SYGCFWLSYASIFI 170


>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 601

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = +2

Query: 227 HATLSGVLLLPPSAMQLPKSVEMAPLATYSA*IIHYLHTPHEYHIPDLILNTETTKE 397
           H+T S    LPP      +S  MA  +T  +     L T H+    D  +NT   +E
Sbjct: 126 HSTNSKPPSLPPRTKSSSQSSPMASTSTSKSRYADSLSTLHDMGFSDDSVNTHALEE 182


>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -1

Query: 220 TSSHS*EASFRGDDHQNHH*YGERHDHRHA 131
           T+ H+   S +   H+ HH +   H H H+
Sbjct: 282 TNHHNNHESDKDLHHEGHHHHHHHHHHHHS 311


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +2

Query: 350  EYHIPDLILNTETTKECLL 406
            ++ IP L L+ +TTK+CL+
Sbjct: 1908 KWDIPPLSLDNKTTKDCLV 1926


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1254

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 251 VVRQTEWRVYYELPLLRGLVSRRRPSKS 168
           V+R T W   ++LP L  L+SR    +S
Sbjct: 736 VIRDTIWGFLHKLPDLERLISRVHAGRS 763


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +2

Query: 293 MAPLATYSA*IIHYLHTPHEYH 358
           +A   T +A +  Y+H P  YH
Sbjct: 387 IASFITLAAVVFEYIHVPRRYH 408


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1313

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -3

Query: 221 YELPLLRGLVSRRRPSKSPLI 159
           +E+ L +GL+SR+ P + PL+
Sbjct: 474 FEVWLSQGLISRKPPDQLPLV 494


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,927,957
Number of Sequences: 5004
Number of extensions: 37492
Number of successful extensions: 107
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)