Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_F04
         (463 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485...    30   0.79 
06_03_1283 - 28957729-28959258,28959354-28959550,28959824-289600...    28   3.2  
01_06_1094 - 34478538-34478624,34478860-34478931,34479154-344792...    27   5.6  
05_01_0214 - 1615519-1616775                                           27   7.3  
03_05_0875 - 28434894-28435082,28435173-28435247,28435399-284354...    27   7.3  
08_02_0707 - 20212190-20214592                                         27   9.7  
03_02_0894 + 12226006-12226484,12226601-12226709                       27   9.7  

>05_03_0235 -
           10747649-10748118,10748226-10748314,10748477-10748574,
           10748934-10749046,10749107-10749200,10749557-10749589,
           10749734-10749851,10750110-10750210,10751036-10751233,
           10751337-10751471,10751752-10751830,10753650-10753738,
           10753835-10753987,10754100-10754285
          Length = 651

 Score = 30.3 bits (65), Expect = 0.79
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 190 RGDDHQNHH*YGERHDHRHAKNSHNF 113
           +G  H++HH +  RH H H  + H++
Sbjct: 532 KGRHHRHHHDHRHRHGHSHGDHHHHY 557


>06_03_1283 -
           28957729-28959258,28959354-28959550,28959824-28960026,
           28960097-28960424,28960524-28960661,28960765-28961020,
           28961529-28961626,28963104-28963367,28964395-28964584
          Length = 1067

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -1

Query: 181 DHQNHH*YGERHDHRHAKNSHNFIR*KHFHDDFKK 77
           DH + H + E   H+H+ N H      H H + K+
Sbjct: 761 DHHHEHNHHEEPAHKHSSNQHGCHDHSHGHSNCKE 795


>01_06_1094 -
           34478538-34478624,34478860-34478931,34479154-34479222,
           34479312-34479422,34480390-34480528,34480590-34480705,
           34480821-34480968,34481058-34481215,34481654-34481827,
           34482592-34483056
          Length = 512

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 6/42 (14%)
 Frame = +3

Query: 240 LAYYFSRQALCN--YRNQLKW----HRWQRTAHKSFIIYIHH 347
           ++Y+   +  C   YR  LKW      WQR+  +  +I +HH
Sbjct: 198 ISYFLLEKQECKALYREALKWVTDQPAWQRSEGRDHVIPVHH 239


>05_01_0214 - 1615519-1616775
          Length = 418

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -1

Query: 211 HS*EASFRGDDHQNHH*YGERHDHRH 134
           HS +    G DH +HH   + H H H
Sbjct: 196 HSHDHDHGGSDHDHHHHEDQEHGHVH 221



 Score = 26.6 bits (56), Expect = 9.7
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = -1

Query: 187 GDDHQNHH*YGERHDHRHAKNSHNFIR*KHFHDD 86
           G DH + H +G  H H H  +        H H+D
Sbjct: 181 GHDHGHGHGHGHGHGHSHDHDHGGSDHDHHHHED 214


>03_05_0875 -
           28434894-28435082,28435173-28435247,28435399-28435490,
           28435721-28435835,28436019-28436188,28436237-28436310,
           28436397-28436553,28436658-28436730,28436898-28436960,
           28437067-28437341,28437710-28437816,28437884-28438788,
           28439742-28440032
          Length = 861

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 285 DFGSCIALGGRSSTPDRVACLLRAPTLKRPRF 190
           DFGS ++ G    TP  V+   RAP +++  F
Sbjct: 717 DFGSAMSAGNNEITPYLVSRFYRAPEIRKILF 748


>08_02_0707 - 20212190-20214592
          Length = 800

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 10/37 (27%), Positives = 16/37 (43%)
 Frame = -1

Query: 184 DDHQNHH*YGERHDHRHAKNSHNFIR*KHFHDDFKKI 74
           ++H + H +   H H H  + H+     H H D   I
Sbjct: 575 ENHSHCHGHDHHHHHHHDHSEHHQQSGDHAHQDISNI 611


>03_02_0894 + 12226006-12226484,12226601-12226709
          Length = 195

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +2

Query: 257 PPSAMQLPKSVEMAPLATYSA*IIHYLHTPHEYHIP 364
           P +A Q P +    P  T     IH+LH+P   H+P
Sbjct: 43  PSTAQQAPFTYPQPPSLTKKI-CIHHLHSPAGTHLP 77


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,809,493
Number of Sequences: 37544
Number of extensions: 225076
Number of successful extensions: 465
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)