Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_F03
         (636 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr...    31   0.18 
SPAC17G8.13c |mst2||histone acetyltransferase Mst2|Schizosacchar...    25   6.9  
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz...    25   9.1  
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    25   9.1  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    25   9.1  
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos...    25   9.1  
SPAC4D7.09 |tif223||translation initiation factor eIF2B|Schizosa...    25   9.1  
SPAC3G9.02 |oar2||3-oxoacyl-[acyl-carrier-protein] reductase Oar...    25   9.1  

>SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 652

 Score = 30.7 bits (66), Expect = 0.18
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = +2

Query: 11  YNCTCTDTIFERPPPRSFRKWKAVNGADKEAYDIIIHC-SHKVRQSKEEVILEPILEYQF 187
           Y C C D   +     S+   + V  AD+ AYD+ +H  + K     +E + EP++  QF
Sbjct: 363 YACDCWDAEIQC----SYGWIECVGCADRSAYDLSVHSKATKTPLVVQEALPEPVVVEQF 418

Query: 188 DMGASR 205
           ++  +R
Sbjct: 419 EVEVNR 424


>SPAC17G8.13c |mst2||histone acetyltransferase
           Mst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 407

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +2

Query: 503 EKLTLDLHKALSEQIDEAKGVATPPALNPDLLPWHKY 613
           +K  L L +   E + +A  +  P  +NP LL W  Y
Sbjct: 337 KKYVLQLKRDELENVYKAWNIKHPQRVNPKLLRWTPY 373


>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
           Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = -1

Query: 324 DIISNVPTSPVAPSTRTFKSDTF*RSLRERDKLSILLSCILLAPISNW 181
           +++ +  T P A      K DT     R  D + I  S   LAPIS W
Sbjct: 33  ELLKSYATGPYARELAAIKEDTEAVLKRINDTVGIKESDTGLAPISFW 80


>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +2

Query: 359 LARATERILSALSQLRTLIPGHYLLHHKPSHGENAILYV 475
           + R T  I +A+      IP   L+HH  +HGE ++  V
Sbjct: 669 ILRVTPNIANAICDQFDSIPS--LIHHLKTHGEESLTNV 705


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2310

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = -1

Query: 222 ILLSCILLAPISNWYSKIGSR--ITSSLDCLTLCEQW 118
           +L SC+ L P + W SK+ +R  + S    L +C  W
Sbjct: 823 LLKSCLFLLPRNFWNSKLYTRKDLISIHISLAMCYWW 859


>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 701

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 10/35 (28%), Positives = 23/35 (65%)
 Frame = -1

Query: 177 SKIGSRITSSLDCLTLCEQWIIMS*ASLSAPLTAF 73
           +++   +TSSL  +++   WI+++ A++S+ L  F
Sbjct: 172 NRLKQAMTSSLSKVSVVTSWILLNQANISSGLDIF 206


>SPAC4D7.09 |tif223||translation initiation factor
           eIF2B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 468

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 13/45 (28%), Positives = 19/45 (42%)
 Frame = +2

Query: 17  CTCTDTIFERPPPRSFRKWKAVNGADKEAYDIIIHCSHKVRQSKE 151
           C   D+I   PP     K++  N +    Y  ++   H   QSKE
Sbjct: 155 CLSCDSIVGLPPIYGLDKFRLDNPSALAVYSPVLKYEHITSQSKE 199


>SPAC3G9.02 |oar2||3-oxoacyl-[acyl-carrier-protein] reductase Oar2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 236

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 183 SSIWVRAGCKRAKSIACLSLSSYVRMCHF*MSEW 284
           SS+ VR   K   SI C +L S +++    + EW
Sbjct: 88  SSLCVRTSEKEIDSIICTNLVSAIKLSKMAILEW 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,728,249
Number of Sequences: 5004
Number of extensions: 54858
Number of successful extensions: 136
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)