Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_F03
         (636 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0675 - 23428948-23431389                                         33   0.25 
12_01_0466 + 3649500-3649635,3649925-3650520                           28   5.4  
04_04_1115 + 31008213-31008707,31009385-31009689,31010848-310111...    27   9.4  
03_06_0137 - 31937541-31939892                                         27   9.4  

>06_03_0675 - 23428948-23431389
          Length = 813

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 350 PDSLARATERILSALSQLRTLIPGHYLLHHKPSH 451
           P+ +   T +++S+ S  R L+PGHY  H    H
Sbjct: 153 PNQIINGTIKLVSSTSSNRLLVPGHYSFHFDDQH 186


>12_01_0466 + 3649500-3649635,3649925-3650520
          Length = 243

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
 Frame = +2

Query: 269 LNVRVEGATGEVGT--FEMISSEEWWERHPDSLARATERILSALSQLRTLIPG 421
           L++R E   G  GT  FE+++   WWE   D L  A  R+   L       PG
Sbjct: 94  LHLRAEPKRGRAGTGLFELVNYRIWWE---DRLRHAGTRLFEMLQAEPKRRPG 143


>04_04_1115 +
           31008213-31008707,31009385-31009689,31010848-31011108,
           31011193-31011401,31011490-31011783,31011861-31011901,
           31011987-31012055,31012164-31012264,31012351-31012435,
           31012539-31012637,31012731-31012799,31012909-31013040,
           31013128-31013222,31013340-31013421
          Length = 778

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 515 LDLHKALSEQIDEAKGVATPPALNPDLLPW 604
           LDL + L   +D AKG+     LNP ++ W
Sbjct: 608 LDLRRRLRMALDVAKGINYLHCLNPPIVHW 637


>03_06_0137 - 31937541-31939892
          Length = 783

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
 Frame = +2

Query: 29  DTIFERPPPRSFRKWKAV------NGADKEAYDIIIHCSHKVRQSKEEVILEPILEYQFD 190
           +++FE  P RS   W A+      NG D +A  +     H+   + +E  +  +L    +
Sbjct: 229 ESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACAN 288

Query: 191 MGASRM 208
           +G  R+
Sbjct: 289 LGNVRI 294


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,729,844
Number of Sequences: 37544
Number of extensions: 388528
Number of successful extensions: 1015
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1015
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)