Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_F01
         (436 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    35   0.005
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe...    32   0.033
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    29   0.41 
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    27   0.94 
SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom...    27   1.2  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    27   1.6  
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    25   3.8  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    25   6.7  
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma...    24   8.8  
SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr ...    24   8.8  

>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 35.1 bits (77), Expect = 0.005
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = -2

Query: 378 PTGPWSPLSPCSPVIPGNPVGP*APSFPGRPAI 280
           P  P +P  P +P  P  PV P APS P RPA+
Sbjct: 533 PAAPVAPEVPSAPQRPAAPVVPEAPSVPQRPAV 565


>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 560

 Score = 32.3 bits (70), Expect = 0.033
 Identities = 18/37 (48%), Positives = 19/37 (51%)
 Frame = -2

Query: 432 IPGIHCGAWSPFSPGNP*PTGPWSPLSPCSPVIPGNP 322
           I G  CG W P    NP   GPWSP     P+IP NP
Sbjct: 327 IEGAGCGEWKPPMIRNPNYRGPWSP-----PMIP-NP 357


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 28.7 bits (61), Expect = 0.41
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = -1

Query: 229 VFPALQ-FFMEVLVDLDHPCHQVHQVYLDDHVYQEFQEVLFL-RQSLIQEFQMDPLVL 62
           +FPALQ  ++ V+ D  +  H   ++    H++QEF+ V  L   S     Q+  L+L
Sbjct: 60  LFPALQTLWIGVVADCSYVTHFTSRMEAKKHIFQEFEGVSTLYEDSFNINVQIHSLIL 117


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 27.5 bits (58), Expect = 0.94
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = -2

Query: 405 SPFSPGNP*PTGPWSPLSPCSPVIPGNPVGP*APSF 298
           SPF  G+P    P S LSP +P +P +  G  AP+F
Sbjct: 278 SPFG-GSPVMHPPVSNLSPRTPAVPMSSDGHLAPAF 312


>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +2

Query: 269 GREGIAGLPGNDGAQGPTGFPG 334
           G EG+ G PG  G     GFPG
Sbjct: 72  GEEGLNGQPGGPGGGPGEGFPG 93


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 12/41 (29%), Positives = 15/41 (36%)
 Frame = +2

Query: 269 GREGIAGLPGNDGAQGPTGFPGITGEQGDKGDQGPVGYGLP 391
           G   +  +PG  GA  P G PG            P G  +P
Sbjct: 541 GYPAVPAMPGIPGATAPPGAPGSYNTSESSNLNAPPGVSMP 581


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = -1

Query: 172 HQVHQVYLDDHVYQEFQEVLFLRQSLIQEFQMDP 71
           H++ ++ LDD + +EF+ + F   S+ +  Q+ P
Sbjct: 305 HELLRLLLDDLISEEFRVLRFNLNSVSRSLQLSP 338


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1647

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -1

Query: 355  VTLFASYTRKSCWSLSPII 299
            +T  A YT  SCW LS II
Sbjct: 1451 LTKDALYTNGSCWELSVII 1469


>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 630

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -1

Query: 436 YDTWYSLWCMVTLFSW 389
           Y+ W + W M+TLF +
Sbjct: 362 YNGWLAQWSMITLFDY 377


>SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 450

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +3

Query: 231 RSSRPKRTAKEN*VVKVLLVYQEMMGLKDQQDFLV*LANRVTK 359
           R S+ KR A    V KV+ +Y+E + L+ + D      NRV K
Sbjct: 19  RESQRKRGADVGVVDKVIEMYKEWVSLRFELDNTNKSINRVQK 61


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,734,626
Number of Sequences: 5004
Number of extensions: 31915
Number of successful extensions: 109
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)