Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_E23
         (529 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70034-5|CAA93851.2|  197|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AF125963-1|AAD14742.1|  339|Caenorhabditis elegans Serpentine re...    27   6.3  
Z83236-1|CAB05777.1|  445|Caenorhabditis elegans Hypothetical pr...    27   8.3  
Z81093-1|CAB03148.2|  507|Caenorhabditis elegans Hypothetical pr...    27   8.3  
Z54236-7|CAA90982.1| 1471|Caenorhabditis elegans Hypothetical pr...    27   8.3  
X98601-1|CAA67198.1|  507|Caenorhabditis elegans non-alpha nicot...    27   8.3  
X98246-1|CAA66902.1|  507|Caenorhabditis elegans nicotinic acety...    27   8.3  
DQ907010-1|ABI83734.1|  405|Caenorhabditis elegans EAK-6B isofor...    27   8.3  
DQ907009-1|ABI83733.1|  388|Caenorhabditis elegans EAK-6A isofor...    27   8.3  

>Z70034-5|CAA93851.2|  197|Caenorhabditis elegans Hypothetical
           protein C18E9.5 protein.
          Length = 197

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 5/72 (6%)
 Frame = +2

Query: 224 INYGIVKEEEQYVYYANYSNTFLYNNEEQR-----LTYLTEDIGFNSYTTTSTRTCLLVE 388
           I Y ++  EE YV+ A  ++TF   +  Q      LT+       N Y   +T    L +
Sbjct: 53  IIYSVITSEE-YVHPAAINSTFFSYDVSQHCDNGTLTWSNRTGSINDYDKVTTGIAWLQD 111

Query: 389 SEIGNLKHRVGI 424
           S    + HR+GI
Sbjct: 112 STRKRIYHRIGI 123


>AF125963-1|AAD14742.1|  339|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 20 protein.
          Length = 339

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 321 TLLKISVSIHILLLPLALAFW 383
           TLLKIS+  +IL L  AL +W
Sbjct: 126 TLLKISIMFYILSLVQALTYW 146


>Z83236-1|CAB05777.1|  445|Caenorhabditis elegans Hypothetical
           protein K10H10.1 protein.
          Length = 445

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 9/33 (27%), Positives = 22/33 (66%)
 Frame = +3

Query: 333 ISVSIHILLLPLALAFWWSLKLVTLSIAWEYIH 431
           + ++  ++L+P+  +FW SL + T+++A   +H
Sbjct: 336 LGIAFCLMLVPMTSSFWISLIIFTMAMAARGLH 368


>Z81093-1|CAB03148.2|  507|Caenorhabditis elegans Hypothetical
           protein F09E8.7 protein.
          Length = 507

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = +2

Query: 284 TFLYNNEEQRLTYLTED-IGFNSYTTTS 364
           ++ YN +E +L +LT D + F+ Y+T+S
Sbjct: 183 SWTYNRDEIKLDFLTSDRVDFSEYSTSS 210


>Z54236-7|CAA90982.1| 1471|Caenorhabditis elegans Hypothetical
           protein C27B7.7 protein.
          Length = 1471

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 12/53 (22%), Positives = 28/53 (52%)
 Frame = +3

Query: 9   PSTRVPLSLVCT*MRDSSCTHIILQLSSAMILMDSFYQLLMKFIHNSSLIWTL 167
           P T  PLS+ CT ++  S   ++ +++   + +DS +  ++  +H   +  T+
Sbjct: 259 PQTNEPLSITCT-VKSVSKASVLWKVNGIKVSVDSSFYTVVTSVHEDFIESTI 310


>X98601-1|CAA67198.1|  507|Caenorhabditis elegans non-alpha
           nicotinic acetylcholinereceptor subunit protein.
          Length = 507

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = +2

Query: 284 TFLYNNEEQRLTYLTED-IGFNSYTTTS 364
           ++ YN +E +L +LT D + F+ Y+T+S
Sbjct: 183 SWTYNRDEIKLDFLTSDRVDFSEYSTSS 210


>X98246-1|CAA66902.1|  507|Caenorhabditis elegans nicotinic
           acetylcholine receptor protein.
          Length = 507

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = +2

Query: 284 TFLYNNEEQRLTYLTED-IGFNSYTTTS 364
           ++ YN +E +L +LT D + F+ Y+T+S
Sbjct: 183 SWTYNRDEIKLDFLTSDRVDFSEYSTSS 210


>DQ907010-1|ABI83734.1|  405|Caenorhabditis elegans EAK-6B isoform
           protein.
          Length = 405

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 14/53 (26%), Positives = 24/53 (45%)
 Frame = +2

Query: 278 SNTFLYNNEEQRLTYLTEDIGFNSYTTTSTRTCLLVESEIGNLKHRVGIYTFY 436
           S+ +  NN  + L +   DI    +   +     L+E  +GN  H+V  Y F+
Sbjct: 140 SDKYFPNNTREELKFGIYDITCKEFVKRNILEYRLLEVSVGNETHQVHHYKFH 192


>DQ907009-1|ABI83733.1|  388|Caenorhabditis elegans EAK-6A isoform
           protein.
          Length = 388

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 14/53 (26%), Positives = 24/53 (45%)
 Frame = +2

Query: 278 SNTFLYNNEEQRLTYLTEDIGFNSYTTTSTRTCLLVESEIGNLKHRVGIYTFY 436
           S+ +  NN  + L +   DI    +   +     L+E  +GN  H+V  Y F+
Sbjct: 140 SDKYFPNNTREELKFGIYDITCKEFVKRNILEYRLLEVSVGNETHQVHHYKFH 192


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,328,111
Number of Sequences: 27780
Number of extensions: 251960
Number of successful extensions: 640
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)