Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_E22
         (616 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical ...    29   3.5  
Z67990-6|CAA91937.1|  199|Caenorhabditis elegans Hypothetical pr...    28   4.6  
U23183-3|AAA64340.3|  496|Caenorhabditis elegans Hypothetical pr...    25   6.9  
Z81562-6|CAB04554.1|  211|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical
            protein C08G9.2 protein.
          Length = 2224

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = +3

Query: 222  IPNRSVFIMSHVSSCQNAYHCNT--YGELSFPMS-PEL 326
            + N  +   S +SSC   YHC    YG++SF  S PE+
Sbjct: 1282 LENHLLATCSPISSCPAGYHCKNSGYGDISFCCSTPEV 1319


>Z67990-6|CAA91937.1|  199|Caenorhabditis elegans Hypothetical
           protein F02D10.6 protein.
          Length = 199

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 12/32 (37%), Positives = 22/32 (68%), Gaps = 3/32 (9%)
 Frame = +1

Query: 133 IIWMNYIRIN---NFVHNIYVFYN*YETFMRV 219
           I+W++Y+ IN   NF++NI++F+     F+ V
Sbjct: 31  IVWISYLFINPVENFIYNIWMFHLLIALFLSV 62


>U23183-3|AAA64340.3|  496|Caenorhabditis elegans Hypothetical
           protein K01A12.3 protein.
          Length = 496

 Score = 25.4 bits (53), Expect(2) = 6.9
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 112 WYYILIHIIWMNYIRINNFVHNIYVFYN*YETFMRVTY 225
           W  +++H++W+     N F   IY ++N     MR+TY
Sbjct: 317 WQLVILHLLWLCNHTCNPF---IYAYFN---DRMRLTY 348



 Score = 20.6 bits (41), Expect(2) = 6.9
 Identities = 5/15 (33%), Positives = 10/15 (66%)
 Frame = +1

Query: 37  FKFKYTNSWAFMLLH 81
           + F+Y + W  ++LH
Sbjct: 309 YAFEYLSGWQLVILH 323


>Z81562-6|CAB04554.1|  211|Caenorhabditis elegans Hypothetical
           protein K03D7.9 protein.
          Length = 211

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = -1

Query: 244 IKTLRLGMLHA*MFHINCKIH--IYYEQNCLYECSSSI*YELVYNTIVFMTCMKVYYE 77
           I TL  G+ +  ++ +  K+H  +  E   LY        ++V+  I  M C+  YYE
Sbjct: 103 IMTLTSGLFYYHLYQLLKKLHSDVIPETQILYRVVPIYSLQVVFTLIALMQCILGYYE 160


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,403,528
Number of Sequences: 27780
Number of extensions: 250745
Number of successful extensions: 509
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)