Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_E21
         (329 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    25   3.9  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    24   6.8  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    24   6.8  
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    23   9.0  
SPAC637.10c |rpn10|pus1|19S proteasome regulatory subunit Rpn10|...    23   9.0  

>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 24.6 bits (51), Expect = 3.9
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +3

Query: 108  HVLHPRDEVTRQLLFTGRVSEPAIVGAAR 194
            H+L P   +T++ +F  + +  A+ GAA+
Sbjct: 1782 HILKPLQLLTKEAIFLSQTNPEALSGAAQ 1810


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1238

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 13/39 (33%), Positives = 15/39 (38%)
 Frame = +1

Query: 100 RPFMFFIQGTKSPGNCCSPGVSPNPQSSGQLVNSKKKQI 216
           RPF        SP    SP V  N + +   VNS    I
Sbjct: 195 RPFSNLPSNKSSPVKHVSPNVKNNSKKTASSVNSNHSSI 233


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
            Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -3

Query: 132  LRPLDEEHERSIGHHLVEDVGI-FSKLIYDTN 40
            ++ L +E  +  GH LVE +GI   +L  DTN
Sbjct: 1189 MKALVKERVKDWGHRLVEPMGISMIELTGDTN 1220


>SPAC6C3.06c |||P-type ATPase, calcium
           transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 4   NEVGSIAYAATQVGIVNKFGEDSDV 78
           N+VG I  A   +GIV K G+ + +
Sbjct: 773 NDVGMIQVANVGIGIVGKEGQQASL 797


>SPAC637.10c |rpn10|pus1|19S proteasome regulatory subunit
           Rpn10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 243

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 11/38 (28%), Positives = 16/38 (42%)
 Frame = +1

Query: 85  EVVADRPFMFFIQGTKSPGNCCSPGVSPNPQSSGQLVN 198
           E+  +     FI    S  +C    + P+PQ    LVN
Sbjct: 146 ELQNESALQHFIDAANSSDSCHLVSIPPSPQLLSDLVN 183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,212,887
Number of Sequences: 5004
Number of extensions: 21874
Number of successful extensions: 48
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)