Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_E21
         (329 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0044 - 25150322-25151260                                         38   0.003
01_06_0824 - 32243495-32244319,32244449-32244859                       30   0.51 
01_01_1152 + 9170628-9171899                                           30   0.51 
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502...    29   1.2  
05_05_0204 + 23241555-23241696,23241770-23242910,23243058-23243583     28   1.5  
08_02_1243 - 25527523-25527960,25527993-25528604                       27   3.6  
02_03_0150 - 15750329-15750450,15751554-15751644,15751967-157520...    26   6.2  
04_01_0046 + 510721-510790,511048-511121,511459-511729,511865-51...    26   8.3  
03_02_0749 - 10899678-10900676                                         26   8.3  

>05_06_0044 - 25150322-25151260
          Length = 312

 Score = 37.5 bits (83), Expect = 0.003
 Identities = 19/40 (47%), Positives = 25/40 (62%)
 Frame = +1

Query: 1   VNEVGSIAYAATQVGIVNKFGEDSDVLYEVVADRPFMFFI 120
           VNE G++A A T VG +  F    D + + VAD PF+FFI
Sbjct: 254 VNEEGTVAAAGT-VGEIMGFAMPDDQIVDFVADHPFLFFI 292


>01_06_0824 - 32243495-32244319,32244449-32244859
          Length = 411

 Score = 29.9 bits (64), Expect = 0.51
 Identities = 25/63 (39%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = +1

Query: 1   VNEVGSIAYAATQVGIVNKFGEDSDVLYEV--VADRPFMFFIQGTKSPGNCCSPGVSPNP 174
           VNE G+ A AAT V +       S  ++ V  VAD PFMF I+   + G     G   NP
Sbjct: 349 VNEEGTEAAAATAVVMTLGCAAPSAPVHVVDFVADHPFMFLIKEDLT-GVVVFAGQVTNP 407

Query: 175 QSS 183
            SS
Sbjct: 408 SSS 410


>01_01_1152 + 9170628-9171899
          Length = 423

 Score = 29.9 bits (64), Expect = 0.51
 Identities = 16/40 (40%), Positives = 26/40 (65%)
 Frame = +1

Query: 1   VNEVGSIAYAATQVGIVNKFGEDSDVLYEVVADRPFMFFI 120
           V+E+G++A A+T V ++ K      V  + VADRPF+F +
Sbjct: 366 VDELGTVAAASTAVVMMQKGSSLPPV--DFVADRPFLFAV 403


>03_05_0293 +
           22849103-22849513,22849670-22849756,22850156-22850284,
           22850507-22851262,22853474-22854250
          Length = 719

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = +1

Query: 1   VNEVGSIAYAATQVGIVNKFGEDSDVLYEVVADRPFMFFIQ 123
           VNE G+ A AAT   I  +    + +  + VAD PF+F IQ
Sbjct: 411 VNEEGTEAAAATAAVITLR---SAPIAEDFVADHPFLFLIQ 448


>05_05_0204 + 23241555-23241696,23241770-23242910,23243058-23243583
          Length = 602

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 19/62 (30%), Positives = 25/62 (40%)
 Frame = +1

Query: 109 MFFIQGTKSPGNCCSPGVSPNPQSSGQLVNSKKKQI*PVHNLQFHNIIVSESCFLYSHSF 288
           MF    T   G C     S    ++G+L   K   +   HN+   NI V   CF Y  +F
Sbjct: 459 MFLYTSTAVVGTCTGAITSVAVSATGELFGRKNFGV--NHNVLVANIPVGSLCFGYLAAF 516

Query: 289 QY 294
            Y
Sbjct: 517 LY 518


>08_02_1243 - 25527523-25527960,25527993-25528604
          Length = 349

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = +1

Query: 121 QGTKSPGNCCSPGVSPNPQSSGQ--LVNSKKKQI*PVHNLQFHNI 249
           Q    PG+ CSP  SP   ++G   L+      + P   + FH++
Sbjct: 105 QSAAPPGSRCSPSPSPTAAAAGDHPLLTQSPHDLVPFIEVPFHHL 149


>02_03_0150 -
           15750329-15750450,15751554-15751644,15751967-15752053,
           15752605-15752660,15752812-15752893,15753141-15753217,
           15754028-15754138,15754744-15754906,15755375-15755433,
           15755882-15756011
          Length = 325

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +2

Query: 53  ISLEKIPTSSTRWWPIDRSCSSSKGRSHQAI 145
           + +  I     RW+P +R  +  KG+ H+A+
Sbjct: 270 VDVSSIMALCIRWYPKERKRTPQKGKKHRAM 300


>04_01_0046 +
           510721-510790,511048-511121,511459-511729,511865-512243,
           512550-512771,513130-513259,514311-514367,514756-515046
          Length = 497

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 8/30 (26%), Positives = 19/30 (63%)
 Frame = -3

Query: 132 LRPLDEEHERSIGHHLVEDVGIFSKLIYDT 43
           ++ +D      +G+H  E++G+F +++ DT
Sbjct: 83  MKIVDAIERLGVGYHFHEEIGMFMRVLNDT 112


>03_02_0749 - 10899678-10900676
          Length = 332

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 111 VLHPRDEVTRQLLFTGRVSEPAIVGAARK 197
           V HP DEV   ++   +V   A   AAR+
Sbjct: 262 VCHPEDEVINSVIVARKVGAAAAAAAARR 290


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,456,566
Number of Sequences: 37544
Number of extensions: 132751
Number of successful extensions: 363
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 363
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 447336660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)