Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_E21
         (329 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    27   0.044
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   1.7  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    21   2.9  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   3.9  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    20   6.7  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    20   6.7  
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    20   8.9  
DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex det...    20   8.9  
DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex det...    20   8.9  
DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex det...    20   8.9  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    20   8.9  
DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex det...    20   8.9  
DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex det...    20   8.9  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    20   8.9  
DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex det...    20   8.9  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    20   8.9  
AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex det...    20   8.9  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    20   8.9  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    20   8.9  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    20   8.9  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    20   8.9  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    20   8.9  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    20   8.9  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 27.5 bits (58), Expect = 0.044
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -2

Query: 271 KSMTLTQ*YYEIVNYEQVISVFF*SLRAAPTIAGSETRPVNSN 143
           KS T T   Y  +NY + I  FF S     T+ GS+   +NS+
Sbjct: 533 KSSTETPPSYNQLNYNENIERFFKSKPPVATMYGSDEEIINSS 575


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 22.2 bits (45), Expect = 1.7
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -3

Query: 108 ERSIGHHLVE 79
           ER IGHHL++
Sbjct: 196 ERQIGHHLIQ 205


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 2.9
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 295 SIEKNDYIKSMTLTQ*YYEIVNYEQV 218
           +I  N+Y K +     YY I+N EQ+
Sbjct: 322 TIHNNNYNKKL-----YYNIINIEQI 342


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.0 bits (42), Expect = 3.9
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = +1

Query: 226 HNLQFHNIIVSESCFLYSHSFQY 294
           HN+  +NI+ + +C L+   F +
Sbjct: 275 HNVFVNNILAASACSLFVVIFHF 297


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 20.2 bits (40), Expect = 6.7
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 283 NDYIKSMTLTQ*YYEIVNYEQV 218
           N+Y  +    + YY I+N EQ+
Sbjct: 101 NNYNNNNYNKKLYYNIINIEQI 122


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 20.2 bits (40), Expect = 6.7
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 283 NDYIKSMTLTQ*YYEIVNYEQV 218
           N+Y  +    + YY I+N EQ+
Sbjct: 101 NNYNNNNYNKKLYYNIINIEQI 122


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 61 QTYLRYQLVLLHK 23
          QTY RYQ + L K
Sbjct: 13 QTYTRYQTLELEK 25


>DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -2

Query: 247 YYEIVNYEQV 218
           YY I+N EQ+
Sbjct: 110 YYNIINIEQI 119


>DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -2

Query: 247 YYEIVNYEQV 218
           YY I+N EQ+
Sbjct: 110 YYNIINIEQI 119


>DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -2

Query: 247 YYEIVNYEQV 218
           YY I+N EQ+
Sbjct: 110 YYNIINIEQI 119


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -2

Query: 247 YYEIVNYEQV 218
           YY I+N EQ+
Sbjct: 110 YYNIINIEQI 119


>DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -2

Query: 247 YYEIVNYEQV 218
           YY I+N EQ+
Sbjct: 110 YYNIINIEQI 119


>DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -2

Query: 247 YYEIVNYEQV 218
           YY I+N EQ+
Sbjct: 110 YYNIINIEQI 119


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -2

Query: 247 YYEIVNYEQV 218
           YY I+N EQ+
Sbjct: 114 YYNIINIEQI 123


>DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -2

Query: 247 YYEIVNYEQV 218
           YY I+N EQ+
Sbjct: 110 YYNIINIEQI 119


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -2

Query: 247 YYEIVNYEQV 218
           YY I+N EQ+
Sbjct: 324 YYNIINIEQI 333


>AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -2

Query: 247 YYEIVNYEQV 218
           YY I+N EQ+
Sbjct: 335 YYNIINIEQI 344


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -2

Query: 247 YYEIVNYEQV 218
           YY I+N EQ+
Sbjct: 335 YYNIINIEQI 344


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -2

Query: 247 YYEIVNYEQV 218
           YY I+N EQ+
Sbjct: 353 YYNIINIEQI 362


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -2

Query: 247 YYEIVNYEQV 218
           YY I+N EQ+
Sbjct: 337 YYNIINIEQI 346


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -2

Query: 247 YYEIVNYEQV 218
           YY I+N EQ+
Sbjct: 355 YYNIINIEQI 364


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
          releasing hormone-binding protein protein.
          Length = 332

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -2

Query: 70 NLLQTYLRYQLV 35
          NLL  Y+R++LV
Sbjct: 56 NLLNAYVRFKLV 67


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 61  QTYLRYQLVLLHK 23
           QTY RYQ + L K
Sbjct: 275 QTYTRYQTLELEK 287


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,925
Number of Sequences: 438
Number of extensions: 1498
Number of successful extensions: 23
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7342137
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)