Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_E19
         (248 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0184 - 28253448-28253743,28253835-28254102,28254439-28255869     26   4.8  
11_01_0792 + 6679002-6679603,6738490-6738520,6738532-6739644           25   6.4  
09_04_0170 + 15310240-15310397,15310523-15310605,15310689-153106...    25   8.5  

>05_07_0184 - 28253448-28253743,28253835-28254102,28254439-28255869
          Length = 664

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +3

Query: 123 FYSQSGDLHEYKIQKADRKQREFIYLTRTDGTNLRTG 233
           FY+  G ++  K+      + EFIY    +GT+   G
Sbjct: 619 FYTNDGIVNSLKVNILSGLEEEFIYRNSDEGTDEEEG 655


>11_01_0792 + 6679002-6679603,6738490-6738520,6738532-6739644
          Length = 581

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +3

Query: 126 YSQSGDLHEYKIQKADRKQREFIYLTRTDGTNLRTGTVPEW 248
           YSQS + H++ ++    K RE  + +R +  N     +PEW
Sbjct: 178 YSQSEEDHQHHLRLVLGKLREHQFESRQNIRNPPPLKIPEW 218


>09_04_0170 +
           15310240-15310397,15310523-15310605,15310689-15310697,
           15310852-15310940,15311514-15311587,15311731-15311781,
           15311887-15311963,15313865-15314463
          Length = 379

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +2

Query: 191 YLFDKNGWNKSQD 229
           +L+DKN WN+SQ+
Sbjct: 63  HLWDKNSWNESQN 75


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,592,929
Number of Sequences: 37544
Number of extensions: 103653
Number of successful extensions: 185
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 14,793,348
effective HSP length: 61
effective length of database: 12,503,164
effective search space used: 262566444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)