Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_E17
(275 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_08_0033 + 27820563-27823482,27823593-27823996 30 0.30
11_01_0398 - 3008074-3008428,3009775-3009926,3010070-3011368 27 2.1
01_06_0006 - 25517892-25517935,25518156-25518276,25518598-255187... 27 2.1
07_03_0154 + 14509979-14512033 27 2.8
11_08_0029 - 27783907-27784310,27784418-27786616,27786751-27787333 26 5.0
11_08_0014 - 27631971-27632374,27632486-27635402 26 5.0
10_08_0244 + 16129365-16129424,16130203-16130391,16130918-16131049 26 5.0
04_03_0848 + 20261635-20261668,20261824-20261824,20261861-202619... 26 5.0
03_02_0637 - 10009580-10009903,10013314-10014153 26 5.0
01_05_0618 + 23723441-23723465,23724733-23724788,23725108-237253... 26 5.0
08_02_0841 - 21749599-21749978,21750409-21753367 25 6.5
04_04_0477 + 25517060-25517152,25517263-25517382,25518203-255185... 25 6.5
04_03_0917 + 20798977-20801369,20801578-20801581 25 8.7
02_01_0438 + 3179627-3180280,3180933-3181156,3182339-3182495 25 8.7
01_01_0802 + 6246267-6247541,6247625-6247682,6247806-6248129,624... 25 8.7
>11_08_0033 + 27820563-27823482,27823593-27823996
Length = 1107
Score = 29.9 bits (64), Expect = 0.30
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 53 GVTENVSLQDKRCRRSVCGAPEKGFIPFP 139
GV N++L+ R +CG+P G +P P
Sbjct: 709 GVFSNITLKSLRGNAGLCGSPRLGLLPCP 737
>11_01_0398 - 3008074-3008428,3009775-3009926,3010070-3011368
Length = 601
Score = 27.1 bits (57), Expect = 2.1
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +2
Query: 11 PSSSGAHCPRAIQCGVTENVSLQDKRCRRSVCGAPEKGFIPFPRCRPS 154
PS + A + Q GV +VSL+ ++ + +K + PF C PS
Sbjct: 296 PSPTKAQSRGSPQLGVPLHVSLKTCSHPQNASSSGQKKYTPFEECYPS 343
>01_06_0006 -
25517892-25517935,25518156-25518276,25518598-25518733,
25519189-25519280,25519358-25519426,25519710-25519821,
25519897-25520015,25520302-25520355,25520811-25520891,
25520968-25521051,25521124-25521315,25521633-25521746,
25521832-25521978,25522066-25522302,25522762-25522810,
25522894-25523027,25523124-25523324,25523532-25523701,
25523773-25523875,25524198-25524361,25525015-25525055,
25525144-25525187
Length = 835
Score = 27.1 bits (57), Expect = 2.1
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Frame = +3
Query: 90 VDAVFVERQKKVLSLFQDVDQVNVDDEYYK-------IGKDYDVEANIDNYTNKKAVEEF 248
VD V+ Q+K + +++ + +++ Y+ I K E + Y NK +EF
Sbjct: 651 VDRVYRIGQEKNVIIYRLITSCTIEERIYEKQVSKEGIFKAATEERDFRRYINKLGYKEF 710
Query: 249 LKLYRIGY 272
LKL +G+
Sbjct: 711 LKLPEMGF 718
>07_03_0154 + 14509979-14512033
Length = 684
Score = 26.6 bits (56), Expect = 2.8
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = +2
Query: 11 PSSSGAHCPRAIQCGVTENVSLQDKRCRRSVCGAPEKGFIPFPRCRP 151
PSSS P A + N KR +S +PE+G +P P P
Sbjct: 7 PSSSAPSSPAASSDSIDLNFLPFLKREPKSEPASPERGPLPLPAAAP 53
>11_08_0029 - 27783907-27784310,27784418-27786616,27786751-27787333
Length = 1061
Score = 25.8 bits (54), Expect = 5.0
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +2
Query: 53 GVTENVSLQDKRCRRSVCGAPEKGFIP 133
GV N++L ++CG P GF+P
Sbjct: 664 GVFSNITLISLMGNAALCGLPRLGFLP 690
>11_08_0014 - 27631971-27632374,27632486-27635402
Length = 1106
Score = 25.8 bits (54), Expect = 5.0
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +2
Query: 53 GVTENVSLQDKRCRRSVCGAPEKGFIP 133
GV N++L ++CG P GF+P
Sbjct: 709 GVFSNITLISLMGNAALCGLPRLGFLP 735
>10_08_0244 + 16129365-16129424,16130203-16130391,16130918-16131049
Length = 126
Score = 25.8 bits (54), Expect = 5.0
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +2
Query: 59 TENVSLQDKRCRRSVCGAPEKGFIPFPRCRPS 154
T N S D+RC R GA F+ CRPS
Sbjct: 46 TANYSFSDRRCTRRQRGAC-GDFVNLKICRPS 76
>04_03_0848 +
20261635-20261668,20261824-20261824,20261861-20261924,
20262647-20262739,20262818-20262926,20263212-20263261,
20263335-20263425,20263660-20263730,20263979-20264077,
20264241-20264307,20264507-20264592
Length = 254
Score = 25.8 bits (54), Expect = 5.0
Identities = 19/55 (34%), Positives = 27/55 (49%)
Frame = +3
Query: 39 VQSSVVSPKTYHFKTKDVDAVFVERQKKVLSLFQDVDQVNVDDEYYKIGKDYDVE 203
VQ V P Y D+D ++ ++V QD Q++ DDEYY+ D D E
Sbjct: 200 VQMQEVPPDFY---IPDIDEDELDPDERVDQHTQD-KQIHRDDEYYEGDNDNDHE 250
>03_02_0637 - 10009580-10009903,10013314-10014153
Length = 387
Score = 25.8 bits (54), Expect = 5.0
Identities = 8/23 (34%), Positives = 15/23 (65%)
Frame = +2
Query: 47 QCGVTENVSLQDKRCRRSVCGAP 115
+CG++ LQ ++ ++CGAP
Sbjct: 347 RCGLSGKAQLQSQQMATAICGAP 369
>01_05_0618 +
23723441-23723465,23724733-23724788,23725108-23725372,
23725623-23725759,23725849-23725943,23726033-23727057,
23727293-23727453,23727816-23727892,23727978-23728125,
23728364-23728441,23728611-23728838
Length = 764
Score = 25.8 bits (54), Expect = 5.0
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = +2
Query: 29 HCPRAIQCGVTENVSLQDKRCRRSVCGAPEK 121
HC +QC + Q K R ++ G+P+K
Sbjct: 201 HCVEELQCNIVVMKRSQPKVVRLNLVGSPDK 231
>08_02_0841 - 21749599-21749978,21750409-21753367
Length = 1112
Score = 25.4 bits (53), Expect = 6.5
Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +3
Query: 15 VLAGLIALVQSSVVSPKTYHFKTKDVDAVFVERQKKVLSLFQDVDQV-NVDDEY 173
+ G ++++ S + K YH KTK++++V + L + ++ N DD+Y
Sbjct: 765 LFVGAVSILILSCILLKFYHPKTKNLESVSTLFEGSSSKLNEVIEATENFDDKY 818
>04_04_0477 +
25517060-25517152,25517263-25517382,25518203-25518506,
25518944-25519305,25519401-25519575,25520510-25520574,
25520725-25520790,25521275-25521350,25521813-25521922
Length = 456
Score = 25.4 bits (53), Expect = 6.5
Identities = 14/63 (22%), Positives = 28/63 (44%)
Frame = +3
Query: 24 GLIALVQSSVVSPKTYHFKTKDVDAVFVERQKKVLSLFQDVDQVNVDDEYYKIGKDYDVE 203
G + ++ + +V K Y + + + + Q +F D+ ++ D+ Y G DY
Sbjct: 98 GALQMLVTGLVQLKDYPVRKRFAQTMLLAPQDNGYYVFSDIFKLICDEYDYYEGADYSHT 157
Query: 204 ANI 212
NI
Sbjct: 158 DNI 160
>04_03_0917 + 20798977-20801369,20801578-20801581
Length = 798
Score = 25.0 bits (52), Expect = 8.7
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = +2
Query: 44 IQCGVTENVSLQDKRCRRSVCGAPEKGFI 130
+ CG+ N S+QD+ G P G I
Sbjct: 343 LDCGINRNTSMQDRFHPMPCVGLPSNGQI 371
>02_01_0438 + 3179627-3180280,3180933-3181156,3182339-3182495
Length = 344
Score = 25.0 bits (52), Expect = 8.7
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 14 SSSGAHCPRAIQCGVTENVSLQDKRC 91
++SGA CP A C + ++ LQ + C
Sbjct: 142 AASGADCPLAAVCDLNVHLPLQAEVC 167
>01_01_0802 +
6246267-6247541,6247625-6247682,6247806-6248129,
6248321-6248355
Length = 563
Score = 25.0 bits (52), Expect = 8.7
Identities = 12/44 (27%), Positives = 27/44 (61%)
Frame = +3
Query: 114 QKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDNYTNKKAVEE 245
+K+ LSL Q D++ VD + + + ++++ + NY KK++ +
Sbjct: 341 KKRNLSLSQHDDEIEVDIDSFDVETLWELDRFVTNY--KKSISK 382
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,770,117
Number of Sequences: 37544
Number of extensions: 119213
Number of successful extensions: 345
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 345
length of database: 14,793,348
effective HSP length: 69
effective length of database: 12,202,812
effective search space used: 268461864
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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