BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_E16
(673 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|... 197 1e-51
SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces pombe... 181 7e-47
SPAC139.05 |||succinate-semialdehyde dehydrogenase |Schizosaccha... 136 3e-33
SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc... 133 2e-32
SPCC550.10 |meu8||betaine aldehyde dehydrogenase |Schizosaccharo... 111 7e-26
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb... 62 7e-11
SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate dehydrogenase|Sch... 47 2e-06
SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 29 0.61
SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M... 29 0.61
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 27 1.9
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 27 2.5
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 26 4.3
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 4.3
SPAC806.02c |||Par A family ATPase iron cluster assembly protein... 26 5.7
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac... 26 5.7
SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit Ss... 25 7.5
SPAC12B10.07 |acp1||F-actin capping protein alpha subunit|Schizo... 25 9.9
SPCC11E10.04 |||mitochondrial ATPase expression protein homolog|... 25 9.9
SPAC22H10.13 |zym1||metallothionein |Schizosaccharomyces pombe|c... 25 9.9
>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 503
Score = 197 bits (480), Expect = 1e-51
Identities = 94/224 (41%), Positives = 138/224 (61%)
Frame = +2
Query: 2 LFIDNEWVDSQSGKTFETRCPHDGSVIAKVAEGDKADIDLAVSAAKRAFKRNSEWRLLDA 181
LFI+N+ VDS G + P +I +VA+ D+ D+D+AV A+ AF+ ++ WR +
Sbjct: 25 LFINNQHVDSVHGGRVKVYSPSTEKLICEVADADEEDVDIAVKVARAAFQTDAPWRKFSS 84
Query: 182 SQRGRLLSKFADLIERDAQYLGELESYNNGVLVSTAVGFVKQVAVLTRYLASIADKIQGD 361
+QRGR LS+ AD IE++ +YL +E+ +NG ++ A G V+ A RY ADK G
Sbjct: 85 AQRGRCLSRLADCIEQNLEYLASIETLDNGKSITLARGDVQAAADCFRYYGGWADKDYGQ 144
Query: 362 TIPADGDVFTYTLKQPVGVCGLILPWNGPIYIFAGKVATALAAGCTVVVKPAEQTPXXXX 541
TI D F YT +P+GVCG I+PWN P + A K+A A+A G T+++K AE TP
Sbjct: 145 TIETDIKRFAYTRHEPIGVCGQIIPWNFPFLMCAWKIAPAVACGNTIILKTAELTPLSAL 204
Query: 542 XXXXXIKEAGFPKGVVNVVNGYGPTAGAALTHHLDVAKISFTGS 673
+ E GFP GV+NV++G G G A++ H+D+ K++FTGS
Sbjct: 205 CLTKFVPECGFPPGVINVLSGDGRRCGNAISSHMDIDKVAFTGS 248
>SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 181 bits (441), Expect = 7e-47
Identities = 97/225 (43%), Positives = 134/225 (59%), Gaps = 1/225 (0%)
Frame = +2
Query: 2 LFIDNEWVDSQSGKTFETRCPHDGSVIAKVAEGDKADIDLAVSAAKRAFKRNSEWRLLDA 181
L+I+ EW +S +T+ET P VIAKV + +ID AV +AK AFK W+ +
Sbjct: 23 LYINGEW--HKSAETWETVDPSIEEVIAKVYLAGEKEIDYAVKSAKEAFKT---WKKVPG 77
Query: 182 SQRGRLLSKFADLIERDAQYLGELESYNNGV-LVSTAVGFVKQVAVLTRYLASIADKIQG 358
S++G LL K A+L E+ A L +E+ ++G LVS A G V L RY A ADKI G
Sbjct: 78 SEKGELLMKLAELTEKHADTLAAIEAMDSGKPLVSNARGDVDGTIALLRYCAGWADKIYG 137
Query: 359 DTIPADGDVFTYTLKQPVGVCGLILPWNGPIYIFAGKVATALAAGCTVVVKPAEQTPXXX 538
IP + Y + P+GVCG I+PWN P+ + K+A ALAAG +++K AE TP
Sbjct: 138 QVIPTGPEKLAYAKRTPIGVCGQIVPWNYPLNMAGWKIAPALAAGNCIIIKSAETTPLSL 197
Query: 539 XXXXXXIKEAGFPKGVVNVVNGYGPTAGAALTHHLDVAKISFTGS 673
++EAGFPKGVVN+++G G AG+ + H + KI+FTGS
Sbjct: 198 LYFATLVEEAGFPKGVVNIISGLGTVAGSYMAKHPGIDKIAFTGS 242
>SPAC139.05 |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 493
Score = 136 bits (329), Expect = 3e-33
Identities = 84/226 (37%), Positives = 120/226 (53%), Gaps = 3/226 (1%)
Frame = +2
Query: 5 FIDNEWVDSQSGKTFETRCPHDGSVIAKVAEGDKADIDLAVSAAKRAFKRNSEWRLLDAS 184
F+ +W+ S + KTFE P G +I KVA+ + A+SAA AFK + +
Sbjct: 21 FVQGKWISSPNNKTFEVDNPATGEIIGKVADVSVEETKKAISAANEAFKTYKNFTHV--- 77
Query: 185 QRGRLLSKFADLIERDAQYLGELESYNNGVLVSTAVGFVKQVAVLTRYLASIADKIQGDT 364
QR +LL ++A+LI + L ++ + NG +S A V + ++ A+ A + GD
Sbjct: 78 QRSQLLERWAELIMENKDDLVKMLTLENGKPLSQAEMEVTTCSGYLKWYAAEAVRTFGDV 137
Query: 365 IPAD--GDVFTYTLKQPVGVCGLILPWNGPIYIFAGKVATALAAGCTVVVKPAEQTPXXX 538
P+ F ++KQPVGV LI PWN P + A K ALAAGCT + PA +TP
Sbjct: 138 APSSLQSQNFLISIKQPVGVSALITPWNFPAAMIARKGGAALAAGCTAIFLPAFRTPYVC 197
Query: 539 XXXXXXIKEAGFPKGVVNVVNGYGPTA-GAALTHHLDVAKISFTGS 673
+EAGFP GV+NV+ +A G LT + V K+SFTGS
Sbjct: 198 LGLVRLAQEAGFPDGVLNVITSSDASAHGKELTTNPIVRKVSFTGS 243
>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 133 bits (322), Expect = 2e-32
Identities = 80/225 (35%), Positives = 116/225 (51%), Gaps = 2/225 (0%)
Frame = +2
Query: 5 FIDNEWVDSQSGKTFETRCPHDGSVIAKVAEGDKADIDLAVSAAKRAFKRNSEWRLLDAS 184
+I +WV + SGKTF+ P +A V + + A+ A AF +R D
Sbjct: 27 YIGGKWVTAASGKTFDVENPGLNETLAPVTDMSVEETRKAIKVAHEAFL---SYRNSDIK 83
Query: 185 QRGRLLSKFADLIERDAQYLGELESYNNGVLVSTAVGFVKQVAVLTRYLASIADKIQGDT 364
+R +L ++ DLI +A L + + NG + A G V A + A A +I GD+
Sbjct: 84 ERYAILRRWYDLIMENADDLATMMTLENGKALGDAKGEVVYAAKFIDWFAGEALRISGDS 143
Query: 365 -IPADGDVFTYTLKQPVGVCGLILPWNGPIYIFAGKVATALAAGCTVVVKPAEQTPXXXX 541
+ ++ T+KQPVGV G+I PWN P + KV ALAAGCTVV++PA +TP
Sbjct: 144 SMSSNPQNRIITIKQPVGVVGIITPWNFPAAMITRKVGAALAAGCTVVIRPAAETPFTAL 203
Query: 542 XXXXXIKEAGFPKGVVNVVNGYGPTA-GAALTHHLDVAKISFTGS 673
+ AG P GV+N+V P+ G LT + + K+SFTGS
Sbjct: 204 ALAKLAERAGVPAGVLNMVTANSPSEHGIELTTNPLIRKVSFTGS 248
>SPCC550.10 |meu8||betaine aldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 500
Score = 111 bits (268), Expect = 7e-26
Identities = 72/229 (31%), Positives = 109/229 (47%), Gaps = 5/229 (2%)
Frame = +2
Query: 2 LFIDNEWVD--SQSGKTFETRCPHDGSVIAKVAEGDKADIDLAVSAAKRAFKRNSEWRLL 175
LFID ++V + K P +I A D+D AV A F R+ W
Sbjct: 23 LFIDGKFVSPIEPAAKPIPLINPATEEIIGTCANASAKDVDSAVENAYNTF-RSGIWAKW 81
Query: 176 DASQRGRLLSKFADLIERDAQYLGELESYNNGVLVSTAVGFVKQVAVLTRYLASIADKIQ 355
QRG +L K A ++ + L +++ N G A+ + A + Y A +A+
Sbjct: 82 PGKQRGLVLRKIAKMMREKRELLAGIDTINCGKPTPYALFDIDSCADMFEYYAEVAETDN 141
Query: 356 GDT---IPADGDVFTYTLKQPVGVCGLILPWNGPIYIFAGKVATALAAGCTVVVKPAEQT 526
+P + + + P GV G+I PWN P+ + K+ A+A+G VV+KP+E
Sbjct: 142 PTVKVPLPNNPGFCAFEKRFPRGVIGVITPWNFPLKMALWKLVPAIASGNCVVLKPSELA 201
Query: 527 PXXXXXXXXXIKEAGFPKGVVNVVNGYGPTAGAALTHHLDVAKISFTGS 673
P KEAG P GV+NV+ G G +GAAL+ H +A ++FTGS
Sbjct: 202 PWSCLEFALICKEAGLPDGVLNVIIGSGKESGAALSCHPKIAYLAFTGS 250
>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 62.1 bits (144), Expect = 7e-11
Identities = 55/219 (25%), Positives = 95/219 (43%), Gaps = 9/219 (4%)
Frame = +2
Query: 44 TFETRCPHDGSVIAKVAEGDKADIDLAVSAAKRAFKRNSEWRLLDASQRGRLLSKFADLI 223
T CP DGS++ +V +K+DID ++ A+ A K EW+ ++R L + I
Sbjct: 4 TLTCYCPGDGSLLGEVKLFNKSDIDQSIILAEEAQK---EWKSTSFAERRNFLKALKENI 60
Query: 224 ERDAQYLGELESYNNG-VLVSTAVGFVKQVAVLTRYLASIADKIQGDTIPADGDVFTYT- 397
R+ E+ + G LV A G + + + ++ T + + +Y
Sbjct: 61 IRNQDKYAEIACKDTGKTLVDAAFGEILVTLEKINWTLANGEQSLRPTKRPNSLLTSYKG 120
Query: 398 --LK-QPVGVCGLILPWNGPIYIFAGKVATALAAGCTVVVKPAEQTPXXX----XXXXXX 556
+K +P+GV ++ WN P++ G + +AL AG +VVK +E T
Sbjct: 121 GYVKYEPLGVIAALVSWNYPLHNALGPIISALFAGNAIVVKGSELTAWSTHQYCEMVRSL 180
Query: 557 IKEAGFPKGVVNVVNGYGPTAGAALTHHLDVAKISFTGS 673
++ G +V + P LT H + I+F GS
Sbjct: 181 LQSMGHSPELVQCITCL-PDVADHLTSHSGIKHITFIGS 218
>SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate
dehydrogenase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 548
Score = 47.2 bits (107), Expect = 2e-06
Identities = 52/214 (24%), Positives = 84/214 (39%), Gaps = 6/214 (2%)
Frame = +2
Query: 50 ETRCPHDGS-VIAKVAEGDKADIDLAVSAAKRAFKRNSEWRLLDASQRGRLLSKFADLIE 226
E RCP + V+A+ ++ A+ AA R K W L + R + K A LI
Sbjct: 61 EQRCPFEHKKVVARYHRAGAKHVEDAIEAALRGKK---VWESLPFADRSAIFLKAAHLIS 117
Query: 227 RDAQY-LGELESYNNGVLVSTA-VGFVKQVAVLTRYLASIADKIQGDTIPADGD-VFTYT 397
+Y L G + A + ++ R+ A ++ P + V+
Sbjct: 118 TKYRYKLMAATMIGQGKNIWQAEIDAGMEIIDFLRFNTKYASELYASQPPENTPGVWNRM 177
Query: 398 LKQPV-GVCGLILPWNGPIYIFAGKVATA-LAAGCTVVVKPAEQTPXXXXXXXXXIKEAG 571
+P+ G I P+N AG +A A L G V++KP++ +EAG
Sbjct: 178 EYRPLEGFVYAITPFN--FTAIAGNLAAAPLLMGNVVLMKPSDHAVLSSYIVYQIFREAG 235
Query: 572 FPKGVVNVVNGYGPTAGAALTHHLDVAKISFTGS 673
P G + + G +H + A + FTGS
Sbjct: 236 LPAGALQFIPGDAVEVSKVCFNHPEFAGLHFTGS 269
>SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 416
Score = 29.1 bits (62), Expect = 0.61
Identities = 35/109 (32%), Positives = 52/109 (47%), Gaps = 22/109 (20%)
Frame = +2
Query: 254 ESYNNGVLVSTAVGFVKQVAVL--TRYLASI-ADKIQGDTI----PADGDV--------- 385
+S+++ V+V + VG V + + T Y +I A+ I T+ P G V
Sbjct: 77 QSHSSPVIVVSTVGTVTETTISGSTEYTTTIPAEGITSGTVEIVEPTAGTVTETITSGTL 136
Query: 386 -FTYTLKQPVG-VCG---LILPWNGPIYIFAGKVATA-LAAGCTVVVKP 514
FT TL Q G V G ++ P N P +++G VAT + TVVV P
Sbjct: 137 PFTTTLAQASGTVSGTVEIVSPKNNPTTVYSGTVATTETFSSSTVVVIP 185
>SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 416
Score = 29.1 bits (62), Expect = 0.61
Identities = 35/109 (32%), Positives = 52/109 (47%), Gaps = 22/109 (20%)
Frame = +2
Query: 254 ESYNNGVLVSTAVGFVKQVAVL--TRYLASI-ADKIQGDTI----PADGDV--------- 385
+S+++ V+V + VG V + + T Y +I A+ I T+ P G V
Sbjct: 77 QSHSSPVIVVSTVGTVTETTISGSTEYTTTIPAEGITSGTVEIVEPTAGTVTETITSGTL 136
Query: 386 -FTYTLKQPVG-VCG---LILPWNGPIYIFAGKVATA-LAAGCTVVVKP 514
FT TL Q G V G ++ P N P +++G VAT + TVVV P
Sbjct: 137 PFTTTLAQASGTVSGTVEIVSPKNNPTTVYSGTVATTETFSSSTVVVIP 185
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 27.5 bits (58), Expect = 1.9
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +2
Query: 101 DKADIDLAVSAAKRAFKRNSE-WRLLDASQRGRLL 202
++ IDL A KRAFKR+++ W L+ LL
Sbjct: 1402 EEITIDLTAEAEKRAFKRDAQKWTNLELDDSADLL 1436
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 27.1 bits (57), Expect = 2.5
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +2
Query: 140 RAFKRNSEWRLLDASQRGRLLSKFADLIERDAQYLG 247
+++K ++ L S R +LL + ADLIE+D ++ G
Sbjct: 1037 QSWKLVNDAALNSLSNRQQLLDEAADLIEKDLEFAG 1072
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 26.2 bits (55), Expect = 4.3
Identities = 24/108 (22%), Positives = 50/108 (46%)
Frame = -2
Query: 390 VNTSPSAGIVSPWILSAIDARYRVSTATCFTNPTAVLTRTPLL*DSSSPRYCASRSIRSA 211
+ T+ S+ VS S+ + S+ T T+P++ + + SSS +S S S+
Sbjct: 123 LQTTVSSSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSS 182
Query: 210 NLLSSRPRCEASNRRHSELRLNARFAALTAKSISALSPSATLAMTDPS 67
+ SS +S+ S ++ +T+ + S+ S S++ + + S
Sbjct: 183 SSSSSSSSSSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSS 230
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 26.2 bits (55), Expect = 4.3
Identities = 40/182 (21%), Positives = 76/182 (41%), Gaps = 6/182 (3%)
Frame = -2
Query: 627 AAPAVXXXXXXXXXXXXXXPASFISAAKAKAVSGVCSAGFTTTVQPAANAVATFPAKI*I 448
+ P + +SFI + + A+S + T PAAN + + +K
Sbjct: 294 SGPNLTTSNTSPQISSTISSSSFIVESPSVALSTSSTTTITNASTPAANTIISRSSK--- 350
Query: 447 GPFHGNIRPHTPTGCFKV*VNTSP---SAGIVSPWILSA---IDARYRVSTATCFTNPTA 286
P T NT+P S I SP +++ I + ++++T T+ +
Sbjct: 351 --------PTDTTNSISF-ANTTPENTSTQITSPTAVNSSTPITSSSVLNSSTPITSSSI 401
Query: 285 VLTRTPLL*DSSSPRYCASRSIRSANLLSSRPRCEASNRRHSELRLNARFAALTAKSISA 106
+ T TP+ +SS +S I S+++L+S +S +S + + A T+ I++
Sbjct: 402 LNTSTPI---TSSSVLNSSTPITSSSILNSSTPITSSTVLNSSTPITSSTALNTSTPITS 458
Query: 105 LS 100
S
Sbjct: 459 SS 460
>SPAC806.02c |||Par A family ATPase iron cluster assembly
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 608
Score = 25.8 bits (54), Expect = 5.7
Identities = 26/110 (23%), Positives = 48/110 (43%), Gaps = 4/110 (3%)
Frame = +2
Query: 65 HDGSVIAKVAEGDKADIDLAVSAAKRAFKRNSEWRLLDASQRGRLLSKFADLIERDAQYL 244
HD V ++ + DIDL + R F +++E + S G + + E L
Sbjct: 31 HDSKVYSRPLKTGILDIDLTGPSIPRMFGKDAERNRIHQSSAGWVPVYTDETKEIGLMSL 90
Query: 245 GELESYNNGVLVSTAVGFVKQVAVLTRYLASIA----DKIQGDTIPADGD 382
G L + N +V K+ A++ ++++ ++ D + DT P GD
Sbjct: 91 GFLLTSKNDSVVWRG---PKKAAMIRQFISDVSWGELDFLIIDTPPGTGD 137
>SPAC1751.01c |gti1||gluconate transporter inducer
Gti1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 25.8 bits (54), Expect = 5.7
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -2
Query: 318 STATCFTNPTAVLTRTPLL*DSSSPRYCASRSI 220
ST++ NP A TR + +SS YC+S S+
Sbjct: 227 STSSAPINPRAPQTRRESISSTSSIHYCSSSSL 259
>SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit
Ssl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 421
Score = 25.4 bits (53), Expect = 7.5
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = +1
Query: 289 CGVCETSCCTYPIPCVNC 342
C C+ CT PI C +C
Sbjct: 311 CPRCKAKVCTLPIECPSC 328
>SPAC12B10.07 |acp1||F-actin capping protein alpha
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 256
Score = 25.0 bits (52), Expect = 9.9
Identities = 6/13 (46%), Positives = 10/13 (76%)
Frame = +1
Query: 349 NPRRHYTGRWRCV 387
NP+ ++ G WRC+
Sbjct: 146 NPKNYWNGSWRCI 158
>SPCC11E10.04 |||mitochondrial ATPase expression protein
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 443
Score = 25.0 bits (52), Expect = 9.9
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +2
Query: 236 QYLGELESYNNGVLVSTAVGFVKQVAVLTRY 328
Q+LG LE NN V KQ++ L RY
Sbjct: 380 QFLGSLEKQNNEVKKKHLQLLEKQISKLMRY 410
>SPAC22H10.13 |zym1||metallothionein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 50
Score = 25.0 bits (52), Expect = 9.9
Identities = 7/19 (36%), Positives = 10/19 (52%)
Frame = +1
Query: 460 CGKSCNCISCRLYCSCETS 516
C C C C+ C C++S
Sbjct: 17 CQSKCGCQDCKESCGCKSS 35
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,529,395
Number of Sequences: 5004
Number of extensions: 48884
Number of successful extensions: 158
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -