Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_E15
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    27   2.3  
SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    27   3.1  
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc...    26   4.1  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    26   5.4  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   9.5  
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr...    25   9.5  

>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 470 SVLPQLYELDGTVYDPLITAKAYQKTAKRFV 562
           +V+P+L+  +G VYD L  A  Y   +KR +
Sbjct: 824 AVVPELHFKEGMVYDSLENAYTYLAESKRML 854


>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 612

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 458 RTLYCPL*ISSRHHRNIAPKQ 396
           R  YCP  I+ +HH N  P+Q
Sbjct: 29  RASYCPQTINVKHHENSFPEQ 49


>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 703

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = +2

Query: 188 TPKIYCKNKWLSMSEGRKLAHNVTEFDAELRKHFTIVVNNP 310
           TP +Y  N W +       + N+  FD E  K+    +N P
Sbjct: 342 TPNMYNVNLWKTSGHWNNYSENMFSFDIEKEKYALKPMNCP 382


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
            Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 16/75 (21%), Positives = 34/75 (45%)
 Frame = +2

Query: 428  KKFKEDNIMYVEVRSVLPQLYELDGTVYDPLITAKAYQKTAKRFVKDHPDFIGAKLIYAP 607
            +KF+E +++ + + S++  +   +  +   +    A+  T       HP F+G    Y  
Sbjct: 1393 QKFREKHLIKLVLASIIVNVPSSENRLSTLMANFYAFSLTVM-MKPTHPLFVGINRYYLQ 1451

Query: 608  SRKVNRSTIDTYLEL 652
             + V+ + I  Y EL
Sbjct: 1452 RQHVDVTDIPMYYEL 1466


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +2

Query: 149  RTENDLLLKFSNSTPKIYCKNKWLSMSEGRKLAHNVTEFDAELRK 283
            + + +LLL   N   KIYC + +  M        ++ E+  +LR+
Sbjct: 2190 KADAELLLTLKNLVQKIYCADYFNHMDLKASRFMDIYEYPVQLRE 2234


>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1225

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +2

Query: 395 PVWEQYFYDALKKFKED-NIMYVEVRSVLPQLYELDGTVYDPLITAKAYQKTAKRFVK 565
           PV+ + FY  L  F E+ N+   +   +     +L G+   PL T +A   T   FV+
Sbjct: 481 PVFNETFYSVLNSFSENLNLEVYDFNDIRSD--KLLGSAVLPLATLEAMPVTNDAFVE 536


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,669,509
Number of Sequences: 5004
Number of extensions: 56225
Number of successful extensions: 149
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)