Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_E15
         (652 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0026 + 246682-246866,247791-247915,248452-248625,249377-24...    29   3.2  
02_05_0982 - 33303500-33304011,33304091-33304208,33304606-333047...    29   3.2  
09_04_0630 + 19104678-19105463,19106169-19106348,19107775-191078...    28   5.6  
07_03_1302 + 25618621-25620495                                         28   7.4  
02_05_0336 + 28033315-28033365,28033580-28033585,28033798-280338...    27   9.8  

>03_01_0026 +
           246682-246866,247791-247915,248452-248625,249377-249467,
           249516-250554
          Length = 537

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 8/118 (6%)
 Frame = +2

Query: 194 KIYCKNK--WLSMSEGRKLAHNVTEFDAELRKHFTIVVNNPEVAYPSIRESWIAFFK--Y 361
           K+Y  NK  W+   +         +   E+ +H +  V++ EV   +I  S    F    
Sbjct: 416 KLYPANKYPWIPKPQLIISQEEAGKIVIEIHRHGS--VHSVEVGVDTIVTSNFPGFSGDK 473

Query: 362 FSTVYHLLSYRPVWEQYFYDALKKFKEDNI---MYVEVRSVLPQLYELDGT-VYDPLI 523
           F+ +  L   R ++ +Y     K+FK DN+   + +  R+ +P LY   G  VY  +I
Sbjct: 474 FTRMEVLALIRHIFPEYLNTIFKEFKMDNLYEDLQIRERNPIPSLYSAQGDGVYAEVI 531


>02_05_0982 -
           33303500-33304011,33304091-33304208,33304606-33304726,
           33304811-33304877,33304968-33305102,33305186-33305297,
           33305852-33306009,33306177-33306300,33306406-33306542,
           33307284-33307403,33307878-33308025,33308674-33308931,
           33309090-33309127,33309232-33309674,33309761-33309845,
           33310063-33310123,33310277-33310453,33311611-33312408,
           33314394-33314693
          Length = 1303

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/74 (21%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
 Frame = +2

Query: 20  QESKVYKIIKSMPKGAALHVHDMALLNADYLVNLTYTPDLYM---CRTENDLLLKFSNST 190
           +E++   +I  + K    +V  +  L  DY V++ Y P  ++   C++  ++ L+  NS+
Sbjct: 35  EEARWANVIGDIHKRRGEYVEALRWLRIDYEVSVKYLPQRHLLPSCQSLGEVHLRLGNSS 94

Query: 191 PKIYCKNKWLSMSE 232
             +  + K L +++
Sbjct: 95  EALTYQKKHLQLAK 108


>09_04_0630 +
           19104678-19105463,19106169-19106348,19107775-19107864,
           19108777-19108958,19109968-19109974,19111763-19111833,
           19112188-19112224,19112433-19112603
          Length = 507

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
 Frame = +2

Query: 488 YELDGTVYD---PLITAKAYQKTAKRFVKDHPD-FIGAK 592
           YE+    Y+   PL+T K  +K  K+F + H D +IG K
Sbjct: 314 YEVSDDTYEMVVPLLTKKIVKKRVKQFKRPHSDRYIGLK 352


>07_03_1302 + 25618621-25620495
          Length = 624

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -2

Query: 348 AIQDSLILGYATSGLFTTIVKCLRSSASNSVTL 250
           A+ DSLI GY+T G    +++ +R   + ++ L
Sbjct: 537 AVFDSLIQGYSTKGEINKVLELIREMITKNIAL 569


>02_05_0336 +
           28033315-28033365,28033580-28033585,28033798-28033884,
           28034741-28034830,28035736-28037778,28037916-28038062,
           28038148-28038560,28038656-28038755
          Length = 978

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/69 (23%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
 Frame = +2

Query: 419 DALKKFKEDNIMYVEVRSVLPQL---YELDGTVYDPLITAKA-YQKTAKRFVKDHPDFIG 586
           D  +K ++D +  +E+RS  P+L   ++    + + + +A++ +Q++    V DH   + 
Sbjct: 624 DPQQKIQKDEVCPIEIRSYTPKLARIFKEANAIMEKMASAQSPHQRSQNLAVPDHVRTLR 683

Query: 587 AKLIYAPSR 613
             L+  PS+
Sbjct: 684 WGLVECPSQ 692


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,133,305
Number of Sequences: 37544
Number of extensions: 313851
Number of successful extensions: 656
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)