Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_E13
         (538 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1795.10c |||Sed5 Vesicle Protein Svp26 |Schizosaccharomyces ...    30   0.25 
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    26   3.1  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    25   9.5  

>SPCC1795.10c |||Sed5 Vesicle Protein Svp26 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 227

 Score = 29.9 bits (64), Expect = 0.25
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
 Frame = +3

Query: 222 SLYYKSDLAHYEARGI*KMYLCNTIYF----MIHLMSYPGG*IWLSVIKLES 365
           +LYY S+     +R + K +LC  +YF    M+ L+ + G   WLS   + S
Sbjct: 26  ALYYISEFVEEHSR-LAKAFLCRLVYFIMAVMVFLVIFDGFPFWLSAFSIFS 76


>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = -3

Query: 536 LVSEYQQYQEA 504
           LVSEYQQYQEA
Sbjct: 418 LVSEYQQYQEA 428


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -2

Query: 255 HNEQDLIYSKG*HNFRHLVIHNIIIKGLDEHLVKSK 148
           H E ++I S   +  +HL++ N I+K    H V  K
Sbjct: 375 HIEPNIIESIASYQLQHLLLFNEILKPDSNHFVLEK 410


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,713,501
Number of Sequences: 5004
Number of extensions: 32903
Number of successful extensions: 72
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)