Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_E13
(538 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0173 - 17519768-17521285 31 0.58
10_02_0155 + 5937974-5939419,5939678-5939867,5940895-5941022 29 1.8
05_04_0250 + 19370155-19370690,19370888-19370948,19371240-193712... 29 1.8
05_04_0306 + 20058640-20059159,20060406-20060819,20060921-200611... 29 3.1
03_01_0034 + 318432-318825,318902-319851 29 3.1
01_06_1060 + 34162161-34162554,34162613-34162675,34163262-341635... 29 3.1
01_02_0004 - 10097759-10098438,10098973-10099242,10099956-10100349 29 3.1
08_02_0944 + 22868885-22870387 28 4.1
07_03_0443 + 18275397-18276355,18276394-18276931 27 7.2
06_03_1086 - 27494238-27494914,27495471-27495740,27495986-27496379 27 7.2
03_06_0176 + 32158462-32158855,32159960-32160229,32160328-32160998 27 7.2
03_05_0575 + 25747813-25748206,25748567-25748614,25750296-257505... 27 7.2
02_01_0499 + 3619909-3620302,3621123-3621392,3621788-3622467 27 7.2
>06_03_0173 - 17519768-17521285
Length = 505
Score = 31.1 bits (67), Expect = 0.58
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 419 WTIWGKTPLSGLRFLAPALHQIPGPRRRSPPGTAGIP 529
W +W +S L +L H++ RRR PPG +P
Sbjct: 6 WVLWATLAVSLLCYLYLTSHRLGSRRRRWPPGPRPLP 42
>10_02_0155 + 5937974-5939419,5939678-5939867,5940895-5941022
Length = 587
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = +2
Query: 428 WGKTPLSGLRFLAPALHQIPGPRRRSPPGTAGIP 529
W P LRF P+ +P P PPG AGIP
Sbjct: 40 WANQPNPFLRFSPPSQIPLPNP----PPGIAGIP 69
>05_04_0250 +
19370155-19370690,19370888-19370948,19371240-19371261,
19372395-19372452,19372580-19372652,19372907-19372999
Length = 280
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = +2
Query: 464 APALHQIPGPRRRSPPGTAGIPRRD 538
+P Q P PRRRSP G RRD
Sbjct: 12 SPPYPQNPPPRRRSPASACGASRRD 36
>05_04_0306 +
20058640-20059159,20060406-20060819,20060921-20061190,
20062179-20062849
Length = 624
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = -3
Query: 536 LVSEYQQYQEATA 498
LVSEYQQYQ+ATA
Sbjct: 598 LVSEYQQYQDATA 610
>03_01_0034 + 318432-318825,318902-319851
Length = 447
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = -3
Query: 536 LVSEYQQYQEATA 498
LVSEYQQYQ+ATA
Sbjct: 418 LVSEYQQYQDATA 430
>01_06_1060 +
34162161-34162554,34162613-34162675,34163262-34163531,
34163944-34164623
Length = 468
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = -3
Query: 536 LVSEYQQYQEATA 498
LVSEYQQYQ+ATA
Sbjct: 439 LVSEYQQYQDATA 451
>01_02_0004 - 10097759-10098438,10098973-10099242,10099956-10100349
Length = 447
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = -3
Query: 536 LVSEYQQYQEATA 498
LVSEYQQYQ+ATA
Sbjct: 418 LVSEYQQYQDATA 430
>08_02_0944 + 22868885-22870387
Length = 500
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 419 WTIWGKTPLSGLRFLAPALHQIPGPRRRSPPGTAGIP 529
W +W +S L +++ ++ G RRR PPG +P
Sbjct: 7 WLLWATLAVSLLYYISNRRRRVGG-RRRCPPGPMPLP 42
>07_03_0443 + 18275397-18276355,18276394-18276931
Length = 498
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +2
Query: 437 TPLSGLRFLAPALHQIPGPRRRSPPGTAGIP 529
TPL+ +LA P PRR PPG+ G+P
Sbjct: 18 TPLAV--YLARRASPPPPPRRNLPPGSLGLP 46
>06_03_1086 - 27494238-27494914,27495471-27495740,27495986-27496379
Length = 446
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/13 (84%), Positives = 13/13 (100%)
Frame = -3
Query: 536 LVSEYQQYQEATA 498
LV+EYQQYQ+ATA
Sbjct: 418 LVAEYQQYQDATA 430
>03_06_0176 + 32158462-32158855,32159960-32160229,32160328-32160998
Length = 444
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/13 (84%), Positives = 13/13 (100%)
Frame = -3
Query: 536 LVSEYQQYQEATA 498
LV+EYQQYQ+ATA
Sbjct: 418 LVAEYQQYQDATA 430
>03_05_0575 +
25747813-25748206,25748567-25748614,25750296-25750565,
25750658-25751334
Length = 462
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/13 (84%), Positives = 13/13 (100%)
Frame = -3
Query: 536 LVSEYQQYQEATA 498
LV+EYQQYQ+ATA
Sbjct: 434 LVAEYQQYQDATA 446
>02_01_0499 + 3619909-3620302,3621123-3621392,3621788-3622467
Length = 447
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/13 (84%), Positives = 13/13 (100%)
Frame = -3
Query: 536 LVSEYQQYQEATA 498
LV+EYQQYQ+ATA
Sbjct: 418 LVAEYQQYQDATA 430
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,344,176
Number of Sequences: 37544
Number of extensions: 191887
Number of successful extensions: 406
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 406
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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