Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_E13
         (538 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC063833-1|AAH63833.1| 1336|Homo sapiens collagen, type XVIII, a...    31   2.0  
AY484971-3|AAR83297.1| 1516|Homo sapiens type XVIII collagen mid...    31   2.0  
AY484971-2|AAR83296.1| 1751|Homo sapiens type XVIII collagen lon...    31   2.0  
AY484971-1|AAR83298.1| 1336|Homo sapiens type XVIII collagen sho...    31   2.0  
AL163302-2|CAB90482.1| 1519|Homo sapiens human type XVIII collag...    31   2.0  
AF018082-1|AAC39659.1| 1336|Homo sapiens type XVIII collagen pro...    31   2.0  
AF018081-1|AAC39658.1| 1516|Homo sapiens type XVIII collagen pro...    31   2.0  
BC112189-1|AAI12190.1|  203|Homo sapiens chromosome 2 open readi...    30   6.0  
BC093716-1|AAH93716.1|  203|Homo sapiens chromosome 2 open readi...    30   6.0  
BC043584-1|AAH43584.1|  209|Homo sapiens MGC50273 protein protein.     30   6.0  
AF038169-1|AAB97362.1|  203|Homo sapiens unknown protein.              30   6.0  
AC103564-1|AAY24065.1|  209|Homo sapiens unknown protein.              30   6.0  
AC093724-1|AAX82001.1|  203|Homo sapiens unknown protein.              30   6.0  

>BC063833-1|AAH63833.1| 1336|Homo sapiens collagen, type XVIII,
           alpha 1 protein.
          Length = 1336

 Score = 31.5 bits (68), Expect = 2.0
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +2

Query: 440 PLSGLRFLAPALHQIPGPR-RRSPPGTAGIPRRD 538
           P+S L    PAL  +PGP+    PPG  G P RD
Sbjct: 371 PVSPLGPAGPALQTVPGPQGPPGPPGRDGTPGRD 404


>AY484971-3|AAR83297.1| 1516|Homo sapiens type XVIII collagen middle
           variant protein.
          Length = 1516

 Score = 31.5 bits (68), Expect = 2.0
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +2

Query: 440 PLSGLRFLAPALHQIPGPR-RRSPPGTAGIPRRD 538
           P+S L    PAL  +PGP+    PPG  G P RD
Sbjct: 551 PVSPLGPAGPALQTVPGPQGPPGPPGRDGTPGRD 584


>AY484971-2|AAR83296.1| 1751|Homo sapiens type XVIII collagen long
           variant protein.
          Length = 1751

 Score = 31.5 bits (68), Expect = 2.0
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +2

Query: 440 PLSGLRFLAPALHQIPGPR-RRSPPGTAGIPRRD 538
           P+S L    PAL  +PGP+    PPG  G P RD
Sbjct: 786 PVSPLGPAGPALQTVPGPQGPPGPPGRDGTPGRD 819


>AY484971-1|AAR83298.1| 1336|Homo sapiens type XVIII collagen short
           variant protein.
          Length = 1336

 Score = 31.5 bits (68), Expect = 2.0
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +2

Query: 440 PLSGLRFLAPALHQIPGPR-RRSPPGTAGIPRRD 538
           P+S L    PAL  +PGP+    PPG  G P RD
Sbjct: 371 PVSPLGPAGPALQTVPGPQGPPGPPGRDGTPGRD 404


>AL163302-2|CAB90482.1| 1519|Homo sapiens human type XVIII collagen
           protein.
          Length = 1519

 Score = 31.5 bits (68), Expect = 2.0
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +2

Query: 440 PLSGLRFLAPALHQIPGPR-RRSPPGTAGIPRRD 538
           P+S L    PAL  +PGP+    PPG  G P RD
Sbjct: 551 PVSPLGPAGPALQTVPGPQGPPGPPGRDGTPGRD 584


>AF018082-1|AAC39659.1| 1336|Homo sapiens type XVIII collagen
           protein.
          Length = 1336

 Score = 31.5 bits (68), Expect = 2.0
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +2

Query: 440 PLSGLRFLAPALHQIPGPR-RRSPPGTAGIPRRD 538
           P+S L    PAL  +PGP+    PPG  G P RD
Sbjct: 371 PVSPLGPAGPALQTVPGPQGPPGPPGRDGTPGRD 404


>AF018081-1|AAC39658.1| 1516|Homo sapiens type XVIII collagen
           protein.
          Length = 1516

 Score = 31.5 bits (68), Expect = 2.0
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +2

Query: 440 PLSGLRFLAPALHQIPGPR-RRSPPGTAGIPRRD 538
           P+S L    PAL  +PGP+    PPG  G P RD
Sbjct: 551 PVSPLGPAGPALQTVPGPQGPPGPPGRDGTPGRD 584


>BC112189-1|AAI12190.1|  203|Homo sapiens chromosome 2 open reading
           frame 27 protein.
          Length = 203

 Score = 29.9 bits (64), Expect = 6.0
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +2

Query: 455 RFLAPALHQIPGPRRRSPPGTA 520
           RF  PA+  +P P   SPPGTA
Sbjct: 19  RFPVPAVEPVPAPGADSPPGTA 40


>BC093716-1|AAH93716.1|  203|Homo sapiens chromosome 2 open reading
           frame 27 protein.
          Length = 203

 Score = 29.9 bits (64), Expect = 6.0
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +2

Query: 455 RFLAPALHQIPGPRRRSPPGTA 520
           RF  PA+  +P P   SPPGTA
Sbjct: 19  RFPVPAVEPVPAPGADSPPGTA 40


>BC043584-1|AAH43584.1|  209|Homo sapiens MGC50273 protein protein.
          Length = 209

 Score = 29.9 bits (64), Expect = 6.0
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +2

Query: 455 RFLAPALHQIPGPRRRSPPGTA 520
           RF  PA+  +P P   SPPGTA
Sbjct: 25  RFPVPAVEPVPAPGADSPPGTA 46


>AF038169-1|AAB97362.1|  203|Homo sapiens unknown protein.
          Length = 203

 Score = 29.9 bits (64), Expect = 6.0
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +2

Query: 455 RFLAPALHQIPGPRRRSPPGTA 520
           RF  PA+  +P P   SPPGTA
Sbjct: 19  RFPVPAVEPVPAPGADSPPGTA 40


>AC103564-1|AAY24065.1|  209|Homo sapiens unknown protein.
          Length = 209

 Score = 29.9 bits (64), Expect = 6.0
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +2

Query: 455 RFLAPALHQIPGPRRRSPPGTA 520
           RF  PA+  +P P   SPPGTA
Sbjct: 25  RFPVPAVEPVPAPGADSPPGTA 46


>AC093724-1|AAX82001.1|  203|Homo sapiens unknown protein.
          Length = 203

 Score = 29.9 bits (64), Expect = 6.0
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +2

Query: 455 RFLAPALHQIPGPRRRSPPGTA 520
           RF  PA+  +P P   SPPGTA
Sbjct: 19  RFPVPAVEPVPAPGADSPPGTA 40


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,049,722
Number of Sequences: 237096
Number of extensions: 1156937
Number of successful extensions: 2342
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2335
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 5273648886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)