Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_E11
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating |S...   260   2e-70
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    32   0.083
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    27   1.8  
SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo...    27   2.4  
SPAC926.08c |||Brix doamin protein Rpf2 |Schizosaccharomyces pom...    27   2.4  
SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces...    27   2.4  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    26   5.5  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    26   5.5  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    25   7.2  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    25   9.5  
SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.5  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   9.5  

>SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score =  260 bits (636), Expect = 2e-70
 Identities = 121/179 (67%), Positives = 141/179 (78%), Gaps = 1/179 (0%)
 Frame = +1

Query: 121 KQEADIALIGLAVMGQNLILNMNDKQFVVCAFNRTVSKVEEFLQNEAKGTKVIGATSLED 300
           K+ AD  LIGLAVMGQNLILN  DK F VC +NRT S+V+EFL NEAKG  ++GA SLE+
Sbjct: 4   KEVADFGLIGLAVMGQNLILNGADKGFTVCCYNRTTSRVDEFLANEAKGKSIVGAHSLEE 63

Query: 301 MIMKLKKPRKVMLLVKAGFAVDEFVKKLVPLLEKGDIIIDGGNSQYLDTQRWCKELENTG 480
            + KLKKPR  +LLVKAG  VD  ++ L PLLEKGDII+DGGNS Y DT R C+EL   G
Sbjct: 64  FVSKLKKPRVCILLVKAGKPVDYLIEGLAPLLEKGDIIVDGGNSHYPDTTRRCEELAKKG 123

Query: 481 ILYVGMGVSGGEDGARYGPSLMPGGHVEAWPHVKPIFQAISAKV-NDEPCCDWVGEDGA 654
           IL+VG GVSGGE+GARYGPSLMPGG+  AWP +KPIFQ ++AK  N+EPCCDWVGE GA
Sbjct: 124 ILFVGSGVSGGEEGARYGPSLMPGGNPAAWPRIKPIFQTLAAKAGNNEPCCDWVGEQGA 182


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1367

 Score = 31.9 bits (69), Expect = 0.083
 Identities = 18/59 (30%), Positives = 31/59 (52%)
 Frame = +1

Query: 178  LNMNDKQFVVCAFNRTVSKVEEFLQNEAKGTKVIGATSLEDMIMKLKKPRKVMLLVKAG 354
            +N N+    +   N  VSKV E ++ E    +++G T++ED + +   P  + LL  AG
Sbjct: 841  VNFNEANSAIHERNEKVSKVSEMIEQE---LELLGGTAIEDKLQE-NVPETIALLAIAG 895


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -1

Query: 595 PER*VLHEAKPQRDRQALEKVRNERHLRHRLPPFQHR 485
           PE+  L EA+      AL ++ + + L+H LPP +HR
Sbjct: 132 PEKETLVEARNVGAVYALHRIMSHKSLQHALPP-EHR 167


>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
           Sir2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 15/43 (34%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
 Frame = +1

Query: 235 VEEFLQNE-AKGTKVIGATSLEDMIMKLKKPRKVMLLVKAGFA 360
           ++E L+ E A+  K+    + ED++  LKK + V++LV AG +
Sbjct: 126 LKEVLKREVARRIKLPHFNTFEDVVNLLKKAKNVVVLVGAGIS 168


>SPAC926.08c |||Brix doamin protein Rpf2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 12/50 (24%), Positives = 25/50 (50%)
 Frame = -3

Query: 401 FSRSGTSFLTNSSTANPAFTSNITFLGFFNFMIISSRDVAPMTFVPLASF 252
           FS    + L   +T N     N+T++ FFN+ ++   ++  + +  + SF
Sbjct: 78  FSEKNDAALAVMATHNKKRPHNLTWVRFFNYRVLDMIELGIVNYKSIQSF 127


>SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 312

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -3

Query: 425 PPSIIMSPFSRSGTSFLTNSSTANPAFTSNITFLGFFNFM 306
           PPS+  S FSR+   F++N    NP   +   +L    F+
Sbjct: 219 PPSLERSKFSRAFCDFVSNCLKKNPKDRATAEYLSKHKFI 258


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = +1

Query: 136  IALIGLAVMGQNLILNMNDKQFVVCAFNRTVSK 234
            + L+ +  + Q+++L +N+K  +VC+ N T  K
Sbjct: 1245 LVLVPMMSLRQDMMLRVNEKGLLVCSGNWTAFK 1277


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = +1

Query: 136  IALIGLAVMGQNLILNMNDKQFVVCAFNRTVSK 234
            + L+ +  + Q+++L +N+K  +VC+ N T  K
Sbjct: 1245 LVLVPMMSLRQDMMLRVNEKGLLVCSGNWTAFK 1277


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -1

Query: 490 HRGFLCFPILYTNVEYLSTVSFHH 419
           +  F+ FP++ T +  L T++F H
Sbjct: 534 YNNFVTFPLIITELSQLETLNFSH 557


>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 311 FMIISSRDVAPMTFVPLASFCRNSSTFETVLLNAQ 207
           F  I  R++    F   + FC ++ST+E+V+  AQ
Sbjct: 213 FCQICEREIQSWFFELHSKFCLSTSTYESVVQAAQ 247


>SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 390

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +1

Query: 166 QNLILNMNDKQFVVCAFNRTVSKVEEFLQNEAKGTKV 276
           QNL  ++N+K+ + C  +     +E+ L N  K   +
Sbjct: 72  QNLAASLNEKKSLSCDLHSRKQLIEDDLSNRKKSINI 108


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/22 (59%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = +1

Query: 133 DIAL-IGLAVMGQNLILNMNDK 195
           D+ L IGL  MG  LILNM D+
Sbjct: 405 DLTLSIGLQTMGARLILNMVDR 426


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,579,729
Number of Sequences: 5004
Number of extensions: 52186
Number of successful extensions: 161
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)